Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00789 ATGACAGAAGTAGCTGAACCAGTGCAGTTACTTCATCAAAAAACCGATTTATTCGTGGAACTGGTGCAAGTTTTGAAGGATCAAATATCACAAAAGGTATCAAAAGCAGCCCTTCAGACACTAATTATCCTCTGTCCATGTGGAAGAAACAGAATCAAAGGTGTTAAAGCAGGAACAGTTCCTGTCTTAATAGAGCTTCTGTTAGAGAATTGCAAAGTCAGAAAACCAAATGAAATGATGTTGGTTTTATTGGAATGTCTCTGTCAGTGTGCAGAAGGAAGAGCTGAACTTCTGAGACATGGTGCAGGAATGGCTGTTGTATCTGCGATCCGCGATGAAATAAACGATGTCGAGATAATCTACAAACCGCTTTCTGATATGCTCGAATGCGTAGGCGAAGCGGATGTAGTTTTCACAAGCACGGCATCAGAGAATCCTTTGATTTTAAAACAACATGTTAAGGAACTTCCTTTCGCAAGCGAAGAAATGGGACGAAAGCGCCTCTTCGTCGATATTTCTGTTCCGAGGAACGTAGGTTCGTGCGTCGATGACCTCGAATCAGTCAAAGTTTACAATGTCGACAACCTTAAAGAGGTAGTGGCTGCTAACAAAGAGGACAGACTAAGAAAAGCAATGGAAGCACAAGTGATCATCGGCGAAGAATCGGGCCAATTCGAAGCATGGAGAGACTCGTTAGAAACTGTTCCTACTATCAAGAAACTGAGAGCTTATGCTGAAAGGTTAAGGATTGCTGAGGTTGAGAAATGTTTAGGTAAAATGAGTGATGAGGATATAAATAAGAAGACACAAAAAGCAGTGGATGATCTTGGTAGAGGTATAGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGGAGTGATAGTAGGACTTTGAGTGAAACACTTGAGAATATGCATGCTTTGAATAGAATGTTTGGTCTTGAAACTGAGGTTTCTGTTTTGGAGCAGAAGATTAGAGCTAAAGTGGAGCAAAAAACATAG 1014 0.4073 MTEVAEPVQLLHQKTDLFVELVQVLKDQISQKVSKAALQTLIILCPCGRNRIKGVKAGTVPVLIELLLENCKVRKPNEMMLVLLECLCQCAEGRAELLRHGAGMAVVSAIRDEINDVEIIYKPLSDMLECVGEADVVFTSTASENPLILKQHVKELPFASEEMGRKRLFVDISVPRNVGSCVDDLESVKVYNVDNLKEVVAANKEDRLRKAMEAQVIIGEESGQFEAWRDSLETVPTIKKLRAYAERLRIAEVEKCLGKMSDEDINKKTQKAVDDLGRGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFGLETEVSVLEQKIRAKVEQKT 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00789 337 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 213 318 IPR015896 GO:0008883|GO:0033014|GO:0050661
Vifa3g00789 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 111 207 IPR036291 -
Vifa3g00789 337 Pfam Shikimate / quinate 5-dehydrogenase 107 199 IPR006151 -
Vifa3g00789 337 SUPERFAMILY ARM repeat 13 110 IPR016024 -
Vifa3g00789 337 Gene3D - 92 200 - -
Vifa3g00789 337 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 107 335 - -
Vifa3g00789 337 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 211 299 IPR036453 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00789 Vifa-Chr3 176008528 176009541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00789 3 108 U-box Gene Family AT3G52450 51.852 1.07e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00789 K02492 - gmx:100819951 391.349