Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00785 ATGGGAATCCCTCAAGCCATGGTTGCTCTCCGAGAACGAGCATCGTTCGTGAAAGACTCTCTTCACAGAAGCCAAACCATCACCGATAACATGGTCTCCATTCTCGGTTCGTTCGATCACCGTCTCTCCGCCCTCGAAACCGCAATGCGTCCCACTCAGATAAAAACGCATTCGATTCGAAGTGCTCATGATAATATTGATAAGACTTTGAAAGCTGCGGAGGTGATTTTGACGCAATTTGATCAGACACGCAAGGCGGAGGCTAAAATACTGCGAGGGCCACATGAGGATCTGGAAAGTTATTTGGGAGCAGTTGATCAGCTTAGAGCTAATGTTCGTTTCTTCAGCAGCAAAAAGAGTTTCAAAAGCAGTGAGGGTATCATCAGCCATGCAAACAGCTTGCTTGCTAAAGCTATGTTAAAGCTTGAAGATGAATTTAAACATCTTTTGACAAATTACAGCAAGCCTGTGGAACCTGATCGCCTTTTTGACTGTTTACCTAACTCTCTAAGGCCATCAGCTTCTGGGCAGCAGAGCAGTGGAGGTGGCAAAAGCCATTCAGACAAACCAAGCATAGAAACTGTCACATTCACTCTCCCAACTCTTATTCCCCCCAGAGTTATACCTCTGCTTCATGAATTAGCACAACAAATGGTTCAAGCAGGCCATCAACAGCAGCTCTTTCGAATCTATACAGACACCCGTGCTGCAGTCCTGGACCAAAGTCTAAGAAAGTTAGGTGTTGAGAGGCTGAGTAAGGAGGATGTTCAAAAAATGCAATGGGAGGTTTTGGAGGCTAAGATTGGAAATTGGATTCATTTCATGAGGATTTCTATCAAATTGTTGATTGTGGGGGAGAAAAAAATCTGTGATCAAATATTTGATGGTAATGAGTCTGTAAAAACTCAATGCTTTGCTGAAGCTACTGGCAGCAGTGTGGCTATGCTTCTTAGTTTTGGAGAGGCTGTTGCCAGAAGCAAGAGGTCACCTGAAAAACTATTTGTTCTTCTCGACATGTATGAGATAATGAGAGAACTTCAACCAGAGATTGAGATACTGTTTGATAGTAAAGTTTGCGCTGAAATGCGGGAAGCTGCAATCAATTTGACAAAGCGGCTTGCTCAGACAGCCCAAGAAACCTTTGGTGACTTCGAGGAAGCAGTTGAAAAAGATGCTACCAAAACTGCTGTGCAAGATGGAACTGTCCACCCTCTAACCAGCTATGTCATCAATTACGTGAAATTTCTCTATGACTATCAAGCAACTCTGAAGCAACTTTTTCAAGAGTTTGATCCTGGCGATCCAGAAGCTCAGTTAGCTTCTGTTACAACAAGGATTATGCAGGCTCTCCAGAATAACTTAGATGGAAAGTCTAAACTATATAAGGACCCAGGACTAACCCAATTATTTCTTATGAACAATATCCATTACATAGTGAGATCTGTGAGAAGGTCAGAGGCAAAGGACATGTTGGGGGATGACTGGGTACAAATACACAGAAGAATTGTACAGCAACATGCAAATCAATATAAAAGGATCTCTTGGGCAAAGATCTTGCAGTGCCTCACTGTCCAAGGAACTAATTCATCTGGTGGAGGGGACAGCGGAATTTCAAGAACAGCAGTTAAAGATAGGTTCAAGACATTTAACGCTCAATTCGAGGAGCTTCATCAGAGACAATCCCAGTGGACTGTTCCTGATAGTGAGTTGCGCGAATCGCTTAGACTGGCTGTTGCTGAAGTTCTGTTGCCTGCCTACAGATCTTTCCTTAAACGTTTTGGGCCCATGATTGAGAATGGCAAAAATCCTCAAAAATACATCAGATACTCTCCTGAGAATCTTGAACAAATGCTCGGTGAATTTTTCGAAAGCAAGGCATGGAGTGAACAGAAGCGATGA 1899 0.4313 MGIPQAMVALRERASFVKDSLHRSQTITDNMVSILGSFDHRLSALETAMRPTQIKTHSIRSAHDNIDKTLKAAEVILTQFDQTRKAEAKILRGPHEDLESYLGAVDQLRANVRFFSSKKSFKSSEGIISHANSLLAKAMLKLEDEFKHLLTNYSKPVEPDRLFDCLPNSLRPSASGQQSSGGGKSHSDKPSIETVTFTLPTLIPPRVIPLLHELAQQMVQAGHQQQLFRIYTDTRAAVLDQSLRKLGVERLSKEDVQKMQWEVLEAKIGNWIHFMRISIKLLIVGEKKICDQIFDGNESVKTQCFAEATGSSVAMLLSFGEAVARSKRSPEKLFVLLDMYEIMRELQPEIEILFDSKVCAEMREAAINLTKRLAQTAQETFGDFEEAVEKDATKTAVQDGTVHPLTSYVINYVKFLYDYQATLKQLFQEFDPGDPEAQLASVTTRIMQALQNNLDGKSKLYKDPGLTQLFLMNNIHYIVRSVRRSEAKDMLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQGTNSSGGGDSGISRTAVKDRFKTFNAQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFLKRFGPMIENGKNPQKYIRYSPENLEQMLGEFFESKAWSEQKR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00785 632 MobiDBLite consensus disorder prediction 170 190 - -
Vifa3g00785 632 Gene3D Exocyst complex component Exo70 74 632 - -
Vifa3g00785 632 Pfam Exo70 exocyst complex subunit 270 619 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vifa3g00785 632 SUPERFAMILY Cullin repeat-like 76 623 IPR016159 -
Vifa3g00785 632 Coils Coil 359 379 - -
Vifa3g00785 632 PANTHER EXOCYST COMPLEX PROTEIN EXO70 57 623 IPR004140 GO:0000145|GO:0006887
Vifa3g00785 632 MobiDBLite consensus disorder prediction 166 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00785 Vifa-Chr3 174734689 174740493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00785 1 632 EXO70 exocyst subunit family AT5G52340 78.831 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00785 K07195 - gmx:100779774 1066.22