Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00780 ATGACTAGCAATCAAGGAAATAAGCAAACTCTCTCACCTTCCACTACTCGTTTCTTTAAAGTTATAACAACATCAATTTGTCAAGAAGAAAAGTTTAGGATTCCAAACGGTTTCATTAGAAAACATAATAATGATATGTCAAGTCGAATGTTTCTCAAGACTCCGGATGACAAAAAATGGGAAATGCACATCACTAAAGATGATGAAGGTTTTTGGTTTGAAAAGGGTTGGAAGGAATTTGCTACATATTATTCACTAGATCATGGATACATGATATTCTTTCAATATGAAGGAAACTCTCTTTTTGTGATACACATATTTGGCAAGAATACATTTGAAATTGAATATCCTTTCAATGAAAATCATCATGAACAAGACAATCTTGTTGAAACTAGTGATGATGACTCCGTTGAAATTTTGGATAAGTCAACTTCATGCAAGAAGAAGACTAGACCTAAATCGCCAGTTTCATATCCTCAGCCACAAAAGAAGAAACTTAGAAGTCACACAATTAAAGATGTTGGAACAAGCTCCAAATTTCATGACTTTCCTAAGCATCATGTTCAAGACGATACAAGTGATAGCATCGAACACCAGAGAGCGGAGCATGAGCACGAGAATGAAGCGTTAAATAGAGCTAGAAGTTTCAAATCTAAAAATCCTTCATTCATGATTGTCATGAAACCTTCATATCTTTTTAGCTATTTTTTGCATATTCCAACAAAATTTACAATAGATTATATGAAGAAAGAGCAAAGTGAAATTCTTCTTGAGCTCGTGGATGGTAGAATTTGGGATGCCAAATATTGTTTTGGAAAAATTAAAGTTGGATGGAAGAAATTTGTAGGAGACAATGAGTTGAAAAATGGTGATGTGTGTGTGTTTGAGTTAGTCAAAAGCAAAACTCTTACTTTAAAAGTACTAATTTTTCGACTTGAAGAATCACATTTTCCATCACCTCAAGATCAAAGAGACAAAGACATCTCGGGTGCCGAGAGTCAACCCATTATTCTCGATAAAGACGAGAAGGTGCAAGGAAGAACTTCATTGCGAACAAAGACTCATGTATTTATGAATGAAGTTCAGGACAAAGATGATAAAGATGATAAGTTCAACTTTAAATATCCTTTTTTCAAAGTCAAAATTACGAAGAATCCACGAAGACACTCTAGATTGATTTTACCAATGTCCTTCATTAGAAAGTATTTGGATAATAAGAAGGAGCAGATTGTGATGTTAAAAATAGGGAAGAAATCATGGCCTGTAAAATTGCTATGTTATTCAGACAGGAAATCTGGAGAGTTTGCCAGAGGTTGGAATCAATTTTGGGAAGAAAGTAAATTGAAAGGTGGAGATGTATGTGTCTTTGAGCTCATCAAGAAGAATAAAGATGCTCTATTTCAAGTTCATATTTTTAGAGGCAATTGA 1428 0.3396 MTSNQGNKQTLSPSTTRFFKVITTSICQEEKFRIPNGFIRKHNNDMSSRMFLKTPDDKKWEMHITKDDEGFWFEKGWKEFATYYSLDHGYMIFFQYEGNSLFVIHIFGKNTFEIEYPFNENHHEQDNLVETSDDDSVEILDKSTSCKKKTRPKSPVSYPQPQKKKLRSHTIKDVGTSSKFHDFPKHHVQDDTSDSIEHQRAEHEHENEALNRARSFKSKNPSFMIVMKPSYLFSYFLHIPTKFTIDYMKKEQSEILLELVDGRIWDAKYCFGKIKVGWKKFVGDNELKNGDVCVFELVKSKTLTLKVLIFRLEESHFPSPQDQRDKDISGAESQPIILDKDEKVQGRTSLRTKTHVFMNEVQDKDDKDDKFNFKYPFFKVKITKNPRRHSRLILPMSFIRKYLDNKKEQIVMLKIGKKSWPVKLLCYSDRKSGEFARGWNQFWEESKLKGGDVCVFELIKKNKDALFQVHIFRGN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00780 475 ProSiteProfiles B3 DNA-binding domain profile. 377 475 IPR003340 GO:0003677
Vifa3g00780 475 CDD B3_DNA 376 473 IPR003340 GO:0003677
Vifa3g00780 475 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Vifa3g00780 475 CDD B3_DNA 221 311 IPR003340 GO:0003677
Vifa3g00780 475 Gene3D - 11 111 IPR015300 -
Vifa3g00780 475 MobiDBLite consensus disorder prediction 142 209 - -
Vifa3g00780 475 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Vifa3g00780 475 SUPERFAMILY DNA-binding pseudobarrel domain 372 473 IPR015300 -
Vifa3g00780 475 SMART B3_2 18 110 IPR003340 GO:0003677
Vifa3g00780 475 SMART B3_2 377 475 IPR003340 GO:0003677
Vifa3g00780 475 SMART B3_2 223 313 IPR003340 GO:0003677
Vifa3g00780 475 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 365 474 IPR044837 -
Vifa3g00780 475 ProSiteProfiles B3 DNA-binding domain profile. 222 313 IPR003340 GO:0003677
Vifa3g00780 475 Gene3D - 356 475 IPR015300 -
Vifa3g00780 475 Gene3D - 201 315 IPR015300 -
Vifa3g00780 475 MobiDBLite consensus disorder prediction 166 209 - -
Vifa3g00780 475 Coils Coil 193 213 - -
Vifa3g00780 475 Pfam B3 DNA binding domain 18 109 IPR003340 GO:0003677
Vifa3g00780 475 Pfam B3 DNA binding domain 223 311 IPR003340 GO:0003677
Vifa3g00780 475 Pfam B3 DNA binding domain 377 474 IPR003340 GO:0003677
Vifa3g00780 475 SUPERFAMILY DNA-binding pseudobarrel domain 216 312 IPR015300 -
Vifa3g00780 475 CDD B3_DNA 17 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00780 Vifa-Chr3 173381426 173383630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00780 376 475 B3 DNA Binding Superfamily AT3G18990 35.644 8.10e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g00780 B3 4.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00780 - - tpra:123895950 584.334