Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00779 ATGGCGACATACTTTCATAATAATTCAGAAATTCAAGGTGGTTCTACCGACGGACTTCAAACACTGATATTTATGAATCCGTCGGGATACATCAATTACTCCGACCCGCCGCCGCAACAGCAGCAACAGAATCTTGTTTTTCTCAATTCAGCCGCCGCACTCGCCGGAAACACTTCACTACAACAACAGAGTTTATCTCATCCGCCACCACAGTTCGTCGGGGTGCCACTCTCGGCGGAACACTCTTTACACGGCCATCATGATGTCTCCGCCCTGCATGGCTTCCCACCGCGCATGCAGTACAACATGTGGAACGCGGCTGATCCAAGTTCGGTGGCGCGTGAGGGCGCACGCGCTACTCAAGGACTGTCTTTAAGCCTACACGCGCAAGGGTCGGGCGAGGACGGTGGACAGTGTTCCTCTGTCTCCGCCGGGGTTTCCGGGATTCAGAGTGTGTTCTTGAGTTCTAAGTATTTGAAGGCTACTCAGGAGTTGCTTGACGAGGTTGTTAATGTTAATGGTGGGATTAAGGTTGAAAGTGTTAAGAAGAGTTTTGAGAAAAATAAGGTTGTTGGAGAATCTTCAACGGCGGTTAGTGGTGACGGTGGTTCTGTTGGTGGTGGTGGTAATGGAAATGGAAAACGTAGCTCTGAGTTATCAACTACTGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGTTAATTAACATGCTTGATGAAGTGGAACAAAGATATAGACAATACCACAACCAAATGCAGATGGTGATATCCTCATTTGAGCAAGTTGCAGGGATTGGTTCTGCAAGAACATACACTGCACTTGCACTTCAAACGATTTCGAAGCAATTTCGGTGCTTAAAAGATGCTATCACAGGCCAAATTAGAGCTGCAAATAAGAGTTTAGGCGAAGATGAAAGTTTTGGTGGCAAAATTGAAGGGTCAAGGCTCAAATATGTTGATCATCATTTGAGACAACAAAGAGCTATTCAACAATTGGGTATGATTCATCATAATGCTTGGAGACCTCAAAGAGGATTGCCTGAAAGATCGGTTTCGGTTCTTCGTGCTTGGCTTTTTGAGCACTTCCTTCACCCTTATCCAAAGGATTCTGATAAACATATGCTTGCAAAACAAACAGGACTAACTAGGAGCCAGGTTTCGAATTGGTTCATAAATGCACGAGTTCGACTTTGGAAACCAATGGTGGAAGAAATGTACACGGAAGAGATGAAGGATCAAGAGACAAATGGTTCCGAGGAAAACAAATCAAGCAAGAACACCGATGAAGATCCTTCGATGAAAACACCAACTCCACAAGAAAGAGTTCCAACTTCAGAAACAGAATCCAAAAGTTTCAATTCCAAACAAGACATTTCTATAGTTCCGGTTTCAACGCAATCAACTTCACCAATTGGTGTCAATGTTAGAAACAATTCAGGATTCAGCTTCACAGAGCTTGATGGAATAACACAAGCGAGTCCGAAAAGAACAAGGAACCATGAGATTATTCATTCTCCGAATCATAATGAGACGGAAAATAATGAACAAATTTCGATGAAATTCGGTGATGATAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAACCAAACTAATTTCATCGCCGGATTTGGTCAATACCCTATGGAGGAAATCGGAAGATTTGACGCGGAAGAATTCGCGCCAAGGTTTTCAGGAAGAAGGTTGGAAATGAATGAAACAAATGAGTTTGGTGCTATAAACAATTCAAATTCTCATTCTTCGGCCGCATTTGAGAGTATCAACATGCAGAATCCAAAGAGGTTCGCTGCACAATTGTTACCCGATTTTGTGGCCTAA 1839 0.4318 MATYFHNNSEIQGGSTDGLQTLIFMNPSGYINYSDPPPQQQQQNLVFLNSAAALAGNTSLQQQSLSHPPPQFVGVPLSAEHSLHGHHDVSALHGFPPRMQYNMWNAADPSSVAREGARATQGLSLSLHAQGSGEDGGQCSSVSAGVSGIQSVFLSSKYLKATQELLDEVVNVNGGIKVESVKKSFEKNKVVGESSTAVSGDGGSVGGGGNGNGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDESFGGKIEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEEMKDQETNGSEENKSSKNTDEDPSMKTPTPQERVPTSETESKSFNSKQDISIVPVSTQSTSPIGVNVRNNSGFSFTELDGITQASPKRTRNHEIIHSPNHNETENNEQISMKFGDDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEEFAPRFSGRRLEMNETNEFGAINNSNSHSSAAFESINMQNPKRFAAQLLPDFVA 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00779 612 SMART prehox3 147 292 IPR006563 -
Vifa3g00779 612 Pfam Associated with HOX 154 291 IPR006563 -
Vifa3g00779 612 FunFam BEL1-like homeodomain protein 9 343 405 - -
Vifa3g00779 612 MobiDBLite consensus disorder prediction 409 429 - -
Vifa3g00779 612 SMART HOX_1 340 404 IPR001356 GO:0003677
Vifa3g00779 612 MobiDBLite consensus disorder prediction 430 460 - -
Vifa3g00779 612 Pfam Homeobox KN domain 357 396 IPR008422 GO:0003677|GO:0006355
Vifa3g00779 612 CDD homeodomain 340 401 IPR001356 GO:0003677
Vifa3g00779 612 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 425 - -
Vifa3g00779 612 MobiDBLite consensus disorder prediction 409 460 - -
Vifa3g00779 612 ProSiteProfiles 'Homeobox' domain profile. 337 400 IPR001356 GO:0003677
Vifa3g00779 612 MobiDBLite consensus disorder prediction 193 223 - -
Vifa3g00779 612 Coils Coil 224 251 - -
Vifa3g00779 612 SUPERFAMILY Homeodomain-like 341 407 IPR009057 -
Vifa3g00779 612 Gene3D - 343 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00779 Vifa-Chr3 171113000 171115554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00779 1 612 Homeobox Transcription Factor Family AT2G35940 47.099 1.04e-165 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa3g00779 POX 6.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00779 - - gmx:100810851 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00779 3 171113000 171115554 Vifa3g00779 3 171113000 171115554 ECH
Vifa5g03320 5 1095803553 1095806975 Vifa3g00779 3 171113000 171115554 PCT