Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00776 ATGGAAGATATTGAAGTTCCACAGTTTTTTCTTTGTCCAATCTCTCTCCAAATAATGAAAGATCCAGTTACTGCTATAACAGGCATAACCTACGATCGAGACAGCATCGAACATTGGTTACTCCGAAACAAAAACACAACATGTCCTGTCACAAAACAACCTCTTCCACTAGATTCTGATTTAACACCGAACCACACGCTTCGTCGGTTGATTCAATCATGGTGCACACAGAATGCTTCACTTGGTATCGATAGAATCCCAACGCCGAAACCACCTCTCACGACAACTCATGTCGAAAAGCTTCTCAAAGGAATTAAAGACTCGAAGATTCAGCTCAAGAGTTTAATGCAGTTGGAGTTACTTGCCGCGGAGAACGAAAGGAATAAGAAGTGTTTGTTGGAAAACGGTGTCCCGAAAGCGATGATCATGTTCATATATGATTGTTATAGAAAAGGTGAAATCCTCGAAGGAATCGAAGAAGCTCTTAGTTTCTTACAATTTGTTAAGGTTCCTAATGACGACGCCAAGAATCTTTTATCAGAAAACAATGAAATGTTAGATTGTTTAACGTGGATATTAGATTTACCTTCTGAGATAAAGAACTCAGTTGCTGTGAAATCTCATGCGGTTTTGGTGCTTAAAAAATTCATCAACAACTGCGATTCTGTTGTTTTAGAGAGACTAAAACCCGAGTTTTTCAAAAGCGTTGTAAACTCTTTAAAAACCGGTGTAATAACTCAACAAGGTTTATGTGCTGCTTTACATGTTTTGTTATGTTGTTGTCCTTTGGGAAGAAACAGGTTAATGATGGTTGAAGCTGGTGCTGTTAATGAACTGATAGAGATTGAATTAATGTCGATACCGGAGAAGAGAATCACGGAGCTAACTTTTGGTATTTTGTTTCATTTGTGTTCTTGTGCTAATGGGAGGTTTCAGCTTTTGAGTCATGAAGGATCAATTGCAGTGTTGACTGAGAGAATCTTTAAGGTTTCAATAGCGGTTGATGATAGAGCGGTGTTTATACTTTCTTTGATAAGTAAATTTTCGGCTACTAAGACGGTTTTGGAAGAGATGTTAAAAGTTGGAACTATTTCTAAGCTTTTTGTTTTGCTTCAAGCTGATCATGCAAAGTATTTGAAAGATAAGGTTATGGAAATATTTAAGGCTCATTCTGAGATTTGGAAGAATTCTCCTTGCTTTCCTCAAAATTCTTTTTATGCTAGTTTGCATAGGTGA 1236 0.373 MEDIEVPQFFLCPISLQIMKDPVTAITGITYDRDSIEHWLLRNKNTTCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASLGIDRIPTPKPPLTTTHVEKLLKGIKDSKIQLKSLMQLELLAAENERNKKCLLENGVPKAMIMFIYDCYRKGEILEGIEEALSFLQFVKVPNDDAKNLLSENNEMLDCLTWILDLPSEIKNSVAVKSHAVLVLKKFINNCDSVVLERLKPEFFKSVVNSLKTGVITQQGLCAALHVLLCCCPLGRNRLMMVEAGAVNELIEIELMSIPEKRITELTFGILFHLCSCANGRFQLLSHEGSIAVLTERIFKVSIAVDDRAVFILSLISKFSATKTVLEEMLKVGTISKLFVLLQADHAKYLKDKVMEIFKAHSEIWKNSPCFPQNSFYASLHR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00776 411 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vifa3g00776 411 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Vifa3g00776 411 Coils Coil 115 135 - -
Vifa3g00776 411 SUPERFAMILY ARM repeat 98 377 IPR016024 -
Vifa3g00776 411 SUPERFAMILY RING/U-box 4 83 - -
Vifa3g00776 411 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Vifa3g00776 411 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Vifa3g00776 411 Gene3D - 95 401 IPR011989 -
Vifa3g00776 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Vifa3g00776 411 PANTHER WDSAM1 PROTEIN 2 401 IPR045185 GO:0061630
Vifa3g00776 411 CDD RING-Ubox_WDSUB1-like 7 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00776 Vifa-Chr3 169553601 169554836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00776 2 400 U-box Gene Family AT3G11840 41.270 2.82e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00776 - - lja:Lj0g3v0014579.1 557.37