Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00773 ATGAATCAAGAGATAGAAGTTTCACCATTTTTTCTATGCCCTATTTCATTACAACTCATGAACGATCCTGTTACTGTCTCTACTGGCATAACCTACGACCGACAATCCATCGAAAAATGGCTCTTTTCATCCCAAAACAATACATGTCCTGTTACTAAACAACAGCTCTTACATGATCATCAAAATCTCATTATTCTCACACCAAACCACACTCTTCGTACACTCATTCAAGCATGGTGCACACTTAACTCCTCTTATGGCGTCCAAAGGATTCCAACTCCAAAACCTCCAACAACAAAAACACTTATAGAGAAACACCTCAAAGAGGCTTCAAATTCTTCAGATTCACCTCATTTGCTTATTCAATCCCTCAAAAAGCTTAAAACAATAGCTTCCGAGAGCGAAACGAATCGGCGGTGTATCGAATCTGCTGGTGCTGTAGAGTTCTTAGCATCAATAGTAACAAAAAATAACACAGGCGGTTCATCTTCATGTTCAACAACAGAATTTGAAATTGAGACAACCATTCTTGATGATGATGATATTGAAGGTTTTCCTTTTGACTTCAATATTGGTGTAGATGATGAAGCTATAAACATCCTTTACAATCTTCATTTAACCGAACAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAATTCTTAGACTCTTTAACAAGATTAATGCAAAAGGGTAATTACGATTCAAGAACATACGCCGTTTTTTTGTTGAAATCTATGTCAAAGGTTGCTGATCCGTCAAAACTAGCCAATCTAAAAACCGAATTTTTCGTCGAACTAGTTCAGCTTCTCAAAGATCAGATATCAGAAAAAGCTTCAAAAGCAACACTCCAAACTTTAATTCAGGTCGTCGAAATCGGGAGAAATAGAGTAAGAGCAGTGGAATCAGGCTGTGTTCAAGTTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAACCATGTGAGATGATTTTGGTGCTCTTGGAGATTTTATGTCAATCTGCTGATGGAAGATATGAACTTTTAAGCCATGCTTGTGGTTTAGCTATTGTTTCAAAGAAGATTTTGAGGGTTTCAACAATGGCTAATGATAGAGCGGTGAGAATTCTTCTATCTGTTGCAAGATTCTCTGCAACACATATAGTTGTACAAGAAATGGTGGAAATAGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGAGAAAGCAAGGGAGATTCTTAAATTGCATGCAAAGTCTTGGAGGAATTCTCATTGTGTACCTACTAATTTGCTTGCTTCTTATCCATCATCAAGTGCTTGA 1332 0.3686 MNQEIEVSPFFLCPISLQLMNDPVTVSTGITYDRQSIEKWLFSSQNNTCPVTKQQLLHDHQNLIILTPNHTLRTLIQAWCTLNSSYGVQRIPTPKPPTTKTLIEKHLKEASNSSDSPHLLIQSLKKLKTIASESETNRRCIESAGAVEFLASIVTKNNTGGSSSCSTTEFEIETTILDDDDIEGFPFDFNIGVDDEAINILYNLHLTEQGLKTLLNFKNGEFLDSLTRLMQKGNYDSRTYAVFLLKSMSKVADPSKLANLKTEFFVELVQLLKDQISEKASKATLQTLIQVVEIGRNRVRAVESGCVQVLIELLLDCKERKPCEMILVLLEILCQSADGRYELLSHACGLAIVSKKILRVSTMANDRAVRILLSVARFSATHIVVQEMVEIGVVAKLCLVLQVDSGNKAKEKAREILKLHAKSWRNSHCVPTNLLASYPSSSA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00773 443 Pfam U-box domain 8 83 IPR003613 GO:0004842|GO:0016567
Vifa3g00773 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Vifa3g00773 443 PANTHER WDSAM1 PROTEIN 3 431 IPR045185 GO:0061630
Vifa3g00773 443 SUPERFAMILY RING/U-box 5 87 - -
Vifa3g00773 443 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Vifa3g00773 443 SUPERFAMILY ARM repeat 106 425 IPR016024 -
Vifa3g00773 443 CDD RING-Ubox_PUB 9 59 IPR045210 -
Vifa3g00773 443 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Vifa3g00773 443 Gene3D - 98 428 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00773 Vifa-Chr3 168736791 168738122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00773 1 440 U-box Gene Family AT3G52450 52.809 1.07e-155 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00773 - - tpra:123902305 718.383