Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00772 ATGGATCAAGAGATCGAAGTTTCACCATTTTTTCTATGCCCTATTTCATTACAACTCATGAACGATCCTGTTACTGTCTCTACTGGCATAACCTACGACCGACAGTCCATCGAAAAATGGCTCTTTTCATCCCAAAACAATACATGTCCGGTTACAAAACAACTACTCTTACATGATCATCAAAATCTCATTATTCTCACACCAAATCATACTCTTCGTAGACTCATTCAAGCATGGTGCACCATTAACTCCTCTTATGGCGTCCAAAGGATTCCAACTCCAAAACCTCCAACAACAAAAACTCTTATAGAGAAACACCTCAAAGAAGCTTCTGATTCTTCAGATTCACCTCACTTGCTTTTTCAATCCCTCAGAAAGCTCAAAACAATAGCTTCCGAGAGCGAAACAAATCGACGGTGTATCGAATCTGCCGGTGCTGTGGAGTTCTTAGCATCAATAGTAACAAAAAACAACACAAGCTGCTTATCTTCAAGTTCAACAACAGAACTAACCGAAACTTCCATTCTTGATGATGATGATATTGAAGGTTTTGCTTTTGATTTCGATGTCGGTGCATATGATGAAGCTATAAACATCCTTTACAATCTTCATTTAACCGAACAAGGTTTGAAAACCCTCTTAAACTTCAAAAATGGAGAATTTTTAGACTCTTTAATGAGATTACTGCAAAAGGGTAGTTACGATTCAAGAACATACGCAGTTTTTTTGTTGAAGTCTATGACAAAGGTTGCTGATCCGTCAAAACTAGCCAATCTAAAAACCGAATTTTTCGTCGAACTAGTTCAGCTTCTCAAAGATGAGATATCAAAAAAAGCTTCAAAAGCAACACTCCAAACTTTAATTCAGGTCGTCGAAATCGGGAGAAATAGAGTAAGAGCAGTGGAATCAGGCTGTGTTCAAGGTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAACCATGTGAGATGATTTTGGTGCTCTTGGAGAAGTTATGTCAATGTGCTGATGGAAGATATGAGCTCTTAAGCCATGCTTGTGGTTTAGCTATAGTTTCAAAGAAGATTTTGAGGATTTCAACAATGGCTAATGATAGAGCAGTGAGAATTCTTCTATCTGTTGCAAGATTCTCTGCAACACATATAGTTGTGCAAGAAATGGTGGAAATAGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGAGAAAGCAAGAGACATTCTTAAACTGCATGCAAAGTCTTGGAGGAATTCTCATTGTGTACCTACTAATTTGCTTGCTTCTTATCCATCATCAAGTGTGTGA 1329 0.377 MDQEIEVSPFFLCPISLQLMNDPVTVSTGITYDRQSIEKWLFSSQNNTCPVTKQLLLHDHQNLIILTPNHTLRRLIQAWCTINSSYGVQRIPTPKPPTTKTLIEKHLKEASDSSDSPHLLFQSLRKLKTIASESETNRRCIESAGAVEFLASIVTKNNTSCLSSSSTTELTETSILDDDDIEGFAFDFDVGAYDEAINILYNLHLTEQGLKTLLNFKNGEFLDSLMRLLQKGSYDSRTYAVFLLKSMTKVADPSKLANLKTEFFVELVQLLKDEISKKASKATLQTLIQVVEIGRNRVRAVESGCVQGLIELLLDCKERKPCEMILVLLEKLCQCADGRYELLSHACGLAIVSKKILRISTMANDRAVRILLSVARFSATHIVVQEMVEIGVVAKLCLVLQVDSGNKAKEKARDILKLHAKSWRNSHCVPTNLLASYPSSSV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00772 442 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Vifa3g00772 442 Gene3D - 99 427 IPR011989 -
Vifa3g00772 442 SUPERFAMILY ARM repeat 107 424 IPR016024 -
Vifa3g00772 442 SUPERFAMILY RING/U-box 5 87 - -
Vifa3g00772 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Vifa3g00772 442 PANTHER WDSAM1 PROTEIN 3 430 IPR045185 GO:0061630
Vifa3g00772 442 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Vifa3g00772 442 CDD RING-Ubox_PUB 9 59 IPR045210 -
Vifa3g00772 442 Pfam U-box domain 8 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00772 Vifa-Chr3 168658876 168660204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00772 1 439 U-box Gene Family AT3G52450 52.027 7.40e-155 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00772 - - tpra:123902305 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00772 3 168658876 168660204 Vifa3g00772 3 168658876 168660204 ECH
Vifa3g00772 3 168658876 168660204 Vifa5g03327 5 1098358379 1098359641 PCT