Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00771 ATGAATCAAGACATCGACGTTTCACCATTTTTTCTATGCCCTATTTCACTACAACTCATGAACGATCCTGTTACTGTCTCTACTGGCATAACCTACGACAGACAATCCATCGAAAAATGGCTCTTTTCATCCCAAAACAATACATGTCCTGTTACTAAACAACTACTCTTACATGATCATCAAAATCTCATTATTCTCACACCAAATCATACTCTTCGTACACTCATTCAAGCATGGTGCACACTTAACTCTTCTTATGGCGTCGAAAGGATTCCAACTCCAAAACCTCCAACAACAAAAACTCTTATACAGAAACACCTCAAAGAAGCTTCAAATTCTTCAGATTCACCTCACTTGCTTATTCAATCCCTCAGAAAGCTCAAAATAATCGCTTCCGAGAGCGAAACGAATCGGCGGTGTATCGAATCTGCTGGTGCTGTAGAGTTCTTAGCATCAATAGTAACAAAAAATAACACAGGCGGTTCATCTTCATGTTCAACAACGGAATTAACAGAAACTACCATTCTTGATGATGACGATGATGATGATATTGAAGGTTTTCCTTTTGAATTCAATATTGGTGCAGATGATGAAGCTATAAACATCCTTTACAATCTTCATTTAACCGAACAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAATTTTTAGACTCTTTAATGAGATTAATGCAAAAGGGTAATTATGATTCTAGAACATACGCGGTTTTTTTGTTGAAATCTATGTCAAAGGTTGCTGATCCATCAAAACTAGCCTATCTAAAAACCGAATTTTTCGTCGAACTAGTTCAGCTTCTTAAAGATCAAATATCAAAAAAGGCATCAAAAGCAACACTACAAACATTGATTCAACTCGTTGAATTTGGTAGAAATAGAATAAGAGCAGTAGAATCAGGCTGTGTTCAAGTTTTGATAGAACTTCTTCTTGATTCCAATGAAAGAAAACCATGTGAGATGATTTTGGTGCTCTTGGAGAAGTTATGTCAATCTGCTGATGGAAGATATGAACTTTTAAGCCATGCTTGTGGTTTAGCTATAGTTTCAAAGAAGATTTTGAGGGTTTCAACAATGGCTAATGATAGAGCGGTGAGAATTCTTCTATCTGTTGCAAGATTCTCTGCAACACATATAGTTGTACAAGAAATGGTGGAAATAGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGATAAAGCAAGAGAGATTCTTAAATTGCATGCAAAGTCTTGGAGGAATTCTCATTGTGTACCTACTCATTTGCTTGCTTCTTACCCATCAACAAGTGCTTGA 1338 0.3625 MNQDIDVSPFFLCPISLQLMNDPVTVSTGITYDRQSIEKWLFSSQNNTCPVTKQLLLHDHQNLIILTPNHTLRTLIQAWCTLNSSYGVERIPTPKPPTTKTLIQKHLKEASNSSDSPHLLIQSLRKLKIIASESETNRRCIESAGAVEFLASIVTKNNTGGSSSCSTTELTETTILDDDDDDDIEGFPFEFNIGADDEAINILYNLHLTEQGLKTLLNFKNGEFLDSLMRLMQKGNYDSRTYAVFLLKSMSKVADPSKLAYLKTEFFVELVQLLKDQISKKASKATLQTLIQLVEFGRNRIRAVESGCVQVLIELLLDSNERKPCEMILVLLEKLCQSADGRYELLSHACGLAIVSKKILRVSTMANDRAVRILLSVARFSATHIVVQEMVEIGVVAKLCLVLQVDSGNKAKDKAREILKLHAKSWRNSHCVPTHLLASYPSTSA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00771 445 Gene3D - 97 429 IPR011989 -
Vifa3g00771 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Vifa3g00771 445 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Vifa3g00771 445 SUPERFAMILY ARM repeat 106 426 IPR016024 -
Vifa3g00771 445 SUPERFAMILY RING/U-box 5 87 - -
Vifa3g00771 445 Pfam U-box domain 8 83 IPR003613 GO:0004842|GO:0016567
Vifa3g00771 445 CDD RING-Ubox_PUB 9 59 IPR045210 -
Vifa3g00771 445 PANTHER WDSAM1 PROTEIN 4 433 IPR045185 GO:0061630
Vifa3g00771 445 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00771 Vifa-Chr3 167818376 167819713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00771 1 442 U-box Gene Family AT3G52450 51.454 1.52e-152 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00771 - - tpra:123902305 714.146