Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00758 ATGAACAATCTATTCACCAATTCATTCTCTCGCTTCCACAGCGAGGAAGCCTCCCCGCCGGATCGCCACCACGTCATCGAGATGACAGACGCCGGAAGTCCCGGCACCGGAACCCGAGTAAACCTCGACAAATTCTTCGACGACGTCGAAGGCGTAAAAGACGATCTAAAAGAGCTCGAACAAATTTCACAGACACTAAACAAGAGTCACGAACAGAGCAAAACCGTTCACGACGCTAAGGGAGTGAAGGAGCTCCGTTCTCGTATGGATGACGACGTTTCGGTGGCGTTGAAGAAAGCCAAGATGGTCAAGCTGAAATTGGAGGCTCTGGAACGATCTAATGCTGCCAACCGGAATTTGCCTGGGTGTGGACCCGGTTCGTCTTCGGACCGGACCAGAAGCTCTGTGGTCAACGGGTTGAAGAAGAAGCTTAGGGATTCTATGGAGACGTTTAACCGCCTCCGTCAAGTTATCTCTTCGGAATATAGAGAGACTGTTCAACGGCGTTATTTTACTGTTACCGGCGAGAATCCCGATGATAAGACGCTTGATCTATTGATCTCCACTGGTGAGAGTGAGACTTTTCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGTCAAATTATTGACACCATCAACGAGATTCAAGAGAGGCATGATGCTGTGAAAGAGTTGGAGAAGAATCTACTGGCATTGCACCAAGTTTTCCTCGACATGACAGTATCGGTACAATTGCAAGGTGAGCAGTTGGATGATATTGAGAGCCATGTGGCAAGGGCGAGCTCGTTTGTGCATACCGGAACTGAGCATTTACAGACGGCAAGGAAGCACCAGAGAAATACGAGGAAATGGACCTGTTATCTTATTATACTGATTCTGATAATTGTTTTGGTTGTTGTTCTCATCGTTGTGAAACCATGGCAACATAATGGCGGTGGTGGGGATAGTCAGCCTGCTCCAGCCCAGACAACCCCATCTCCTCCTCCTCCGGCTTCTACTTAA 1002 0.485 MNNLFTNSFSRFHSEEASPPDRHHVIEMTDAGSPGTGTRVNLDKFFDDVEGVKDDLKELEQISQTLNKSHEQSKTVHDAKGVKELRSRMDDDVSVALKKAKMVKLKLEALERSNAANRNLPGCGPGSSSDRTRSSVVNGLKKKLRDSMETFNRLRQVISSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGQIIDTINEIQERHDAVKELEKNLLALHQVFLDMTVSVQLQGEQLDDIESHVARASSFVHTGTEHLQTARKHQRNTRKWTCYLIILILIIVLVVVLIVVKPWQHNGGGGDSQPAPAQTTPSPPPPAST 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00758 333 CDD SNARE_syntaxin1-like 211 273 - -
Vifa3g00758 333 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g00758 333 PANTHER SYNTAXIN 60 295 IPR045242 -
Vifa3g00758 333 SMART SynN_4 37 163 IPR006011 GO:0016020
Vifa3g00758 333 MobiDBLite consensus disorder prediction 120 135 - -
Vifa3g00758 333 Pfam Syntaxin 44 247 IPR006011 GO:0016020
Vifa3g00758 333 SUPERFAMILY t-snare proteins 41 267 IPR010989 GO:0016020|GO:0016192
Vifa3g00758 333 Pfam SNARE domain 248 300 IPR000727 -
Vifa3g00758 333 Gene3D - 201 305 - -
Vifa3g00758 333 FunFam Syntaxin 132 205 305 - -
Vifa3g00758 333 MobiDBLite consensus disorder prediction 116 135 - -
Vifa3g00758 333 Coils Coil 42 69 - -
Vifa3g00758 333 SMART tSNARE_6 207 274 IPR000727 -
Vifa3g00758 333 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa3g00758 333 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 169 - -
Vifa3g00758 333 Gene3D - 40 172 - -
Vifa3g00758 333 MobiDBLite consensus disorder prediction 311 333 - -
Vifa3g00758 333 CDD SynN 42 199 IPR006011 GO:0016020
Vifa3g00758 333 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00758 Vifa-Chr3 163315433 163317037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00758 31 331 SNARE and Associated Proteins AT3G11820 69.579 8.42e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00758 K08486 - gmx:100809258 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00758 3 163315433 163317037 Vifa3g00758 3 163315433 163317037 ECH
Vifa5g03332 5 1099911915 1099913923 Vifa3g00758 3 163315433 163317037 PCT