Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00756 ATGGCTGGTGCAACCACTGCTTCCTCCCCGGTCTACTACCACAAACTCTTCAACTTCTCCTTTACCCATTCACCCATTTCACACACCTTTAACTTCCCACACACAACACCAACCATATCCTCAAAACCCCTCAGACTAAATCCCCAATCATTCAACCCTTCTTCTTTCAAACTCTACCCTCTTTGCGCACCTTCATTTTCCTTCCAACAATTCGAATACACTGAAGAAGAAGAAGAAGAAGAAGCATATGATCCTAAAACTGAAATTAAAACCTTACGGAAGCCAAAATTGTCGCAATTAAACAGACTCTTTGTTGGTAGCCTGCCATTTTCGTTGTCTTCCTCCCAATTGGCTCAACTCTTTGGAGAAGCCGGAAATGTTGTGTCTGTTGAGATTGTGCATGATGACCTTGCGGATAGAAGCAGAGGATTTGCATTCGTTACAATGGGGAGCGCGGAGGAGGCTGAAGAAGCAATTCGAATGTTTGAGGGCACTAATGTTGGAGGTAGGGTTATTAAGGTCAACTTCCCAGAAGTGCCTAAAGTAGGCAAAAGTGTACGAATGGGATCAAATTATAAAGGTTACGTAGACAGCCCTCACAAAATCTATGCCGGAAACCTCGGTTGGGATATGACTTCTCAGGTTCTCAAAAAAGCCTTTGCTGAGCAGCAAGGCTTACTAAGTGCCAAGGTTATCTATGAAAGGAACACCGGAAAATCTCGCGGATTTGGGTTTGTTACGTTCAAAACCGCTGAGGATGTAGAGGCTGCTTTGGATGCTATGAACGGCGTGGAGGTTCAAGGCCGACCTTTACGACTGAGATTGGCTGTCAATAACAAGAAGCCTTCATCTCCTCCGGTAACCGATCAAAATAAAGAAAGTAAAATTGATAGCTTGGAAATGTTGTTTGGAAAAAGCGAATGA 924 0.4383 MAGATTASSPVYYHKLFNFSFTHSPISHTFNFPHTTPTISSKPLRLNPQSFNPSSFKLYPLCAPSFSFQQFEYTEEEEEEEAYDPKTEIKTLRKPKLSQLNRLFVGSLPFSLSSSQLAQLFGEAGNVVSVEIVHDDLADRSRGFAFVTMGSAEEAEEAIRMFEGTNVGGRVIKVNFPEVPKVGKSVRMGSNYKGYVDSPHKIYAGNLGWDMTSQVLKKAFAEQQGLLSAKVIYERNTGKSRGFGFVTFKTAEDVEAALDAMNGVEVQGRPLRLRLAVNNKKPSSPPVTDQNKESKIDSLEMLFGKSE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00756 307 Gene3D - 188 286 IPR012677 -
Vifa3g00756 307 CDD RRM2_NsCP33_like 201 276 - -
Vifa3g00756 307 SUPERFAMILY RNA-binding domain, RBD 97 178 IPR035979 GO:0003676
Vifa3g00756 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Vifa3g00756 307 PANTHER OS02G0815200 PROTEIN 27 282 - -
Vifa3g00756 307 SMART rrm1_1 102 175 IPR000504 GO:0003723
Vifa3g00756 307 SMART rrm1_1 201 274 IPR000504 GO:0003723
Vifa3g00756 307 SUPERFAMILY RNA-binding domain, RBD 196 283 IPR035979 GO:0003676
Vifa3g00756 307 Gene3D - 67 187 IPR012677 -
Vifa3g00756 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 272 IPR000504 GO:0003723
Vifa3g00756 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Vifa3g00756 307 FunFam 33 kDa ribonucleoprotein, chloroplastic 182 286 - -
Vifa3g00756 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00756 Vifa-Chr3 162784538 162786233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00756 202 279 Eukaryotic Initiation Factors Gene Family AT1G49760 29.487 3.74e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00756 - - ccaj:109819134 293.123