Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa3g00756 | ATGGCTGGTGCAACCACTGCTTCCTCCCCGGTCTACTACCACAAACTCTTCAACTTCTCCTTTACCCATTCACCCATTTCACACACCTTTAACTTCCCACACACAACACCAACCATATCCTCAAAACCCCTCAGACTAAATCCCCAATCATTCAACCCTTCTTCTTTCAAACTCTACCCTCTTTGCGCACCTTCATTTTCCTTCCAACAATTCGAATACACTGAAGAAGAAGAAGAAGAAGAAGCATATGATCCTAAAACTGAAATTAAAACCTTACGGAAGCCAAAATTGTCGCAATTAAACAGACTCTTTGTTGGTAGCCTGCCATTTTCGTTGTCTTCCTCCCAATTGGCTCAACTCTTTGGAGAAGCCGGAAATGTTGTGTCTGTTGAGATTGTGCATGATGACCTTGCGGATAGAAGCAGAGGATTTGCATTCGTTACAATGGGGAGCGCGGAGGAGGCTGAAGAAGCAATTCGAATGTTTGAGGGCACTAATGTTGGAGGTAGGGTTATTAAGGTCAACTTCCCAGAAGTGCCTAAAGTAGGCAAAAGTGTACGAATGGGATCAAATTATAAAGGTTACGTAGACAGCCCTCACAAAATCTATGCCGGAAACCTCGGTTGGGATATGACTTCTCAGGTTCTCAAAAAAGCCTTTGCTGAGCAGCAAGGCTTACTAAGTGCCAAGGTTATCTATGAAAGGAACACCGGAAAATCTCGCGGATTTGGGTTTGTTACGTTCAAAACCGCTGAGGATGTAGAGGCTGCTTTGGATGCTATGAACGGCGTGGAGGTTCAAGGCCGACCTTTACGACTGAGATTGGCTGTCAATAACAAGAAGCCTTCATCTCCTCCGGTAACCGATCAAAATAAAGAAAGTAAAATTGATAGCTTGGAAATGTTGTTTGGAAAAAGCGAATGA | 924 | 0.4383 | MAGATTASSPVYYHKLFNFSFTHSPISHTFNFPHTTPTISSKPLRLNPQSFNPSSFKLYPLCAPSFSFQQFEYTEEEEEEEAYDPKTEIKTLRKPKLSQLNRLFVGSLPFSLSSSQLAQLFGEAGNVVSVEIVHDDLADRSRGFAFVTMGSAEEAEEAIRMFEGTNVGGRVIKVNFPEVPKVGKSVRMGSNYKGYVDSPHKIYAGNLGWDMTSQVLKKAFAEQQGLLSAKVIYERNTGKSRGFGFVTFKTAEDVEAALDAMNGVEVQGRPLRLRLAVNNKKPSSPPVTDQNKESKIDSLEMLFGKSE | 307 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa3g00756 | 307 | Gene3D | - | 188 | 286 | IPR012677 | - | |
Vifa3g00756 | 307 | CDD | RRM2_NsCP33_like | 201 | 276 | - | - | |
Vifa3g00756 | 307 | SUPERFAMILY | RNA-binding domain, RBD | 97 | 178 | IPR035979 | GO:0003676 | |
Vifa3g00756 | 307 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 200 | 278 | IPR000504 | GO:0003723 | |
Vifa3g00756 | 307 | PANTHER | OS02G0815200 PROTEIN | 27 | 282 | - | - | |
Vifa3g00756 | 307 | SMART | rrm1_1 | 102 | 175 | IPR000504 | GO:0003723 | |
Vifa3g00756 | 307 | SMART | rrm1_1 | 201 | 274 | IPR000504 | GO:0003723 | |
Vifa3g00756 | 307 | SUPERFAMILY | RNA-binding domain, RBD | 196 | 283 | IPR035979 | GO:0003676 | |
Vifa3g00756 | 307 | Gene3D | - | 67 | 187 | IPR012677 | - | |
Vifa3g00756 | 307 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 202 | 272 | IPR000504 | GO:0003723 | |
Vifa3g00756 | 307 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 103 | 173 | IPR000504 | GO:0003723 | |
Vifa3g00756 | 307 | FunFam | 33 kDa ribonucleoprotein, chloroplastic | 182 | 286 | - | - | |
Vifa3g00756 | 307 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 101 | 179 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa3g00756 | Vifa-Chr3 | 162784538 | 162786233 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa3g00756 | 202 | 279 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 29.487 | 3.74e-07 | 49.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa3g00756 | - | - | ccaj:109819134 | 293.123 |