Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00754 ATGGCTATGCAACCACTTTACCTTAAAGAACATGAAGGAATTGTCCATAATTCTGTTGGACAGTATTCGTCTGCGAATTCAGCTCCATGGTGGAGTAGTAATGCCTATGGATCTCAATCTGTTTATGGAGTAGGAGATTCTTGTGGACAAATCAAACCCTTTTCACTCGAACTTTCAAACTACATGGATCAACTTGCTCCAACTCCAACTAAGAACTTAGTCAGAGGAGTTGAACAATTGTTTGATAAAGGACATACAAACCAATTTACCATCTTTCCAGATGACTGTAAGATGTCACTTGATGCACAAAATCATCAGGCAACCTTGTCACTGCAATCATCATATGCTGTTGCGGAGCCGTATAATCGTTTCGAGCTAGGGTTTAACCAGCCTATGATCTGTGCAAAATATCCTTATATGGATCAATTTTACGGGCTCTTCTCGACTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCGCTTAGCATGACATCTGACGACGGACCAACTTACGTGAATGCAAAGCAGTACAATGGAATCATCAGACGCCGTCAATCCCGTGCCAAGGCTGTGCAGCAGAATAAACTGATCAAACGTAGCAAGCCATATATGCACGAATCGCGTCATTTGCACGCAATGCGGAGGCCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAAGTTTCTGCAAATGGGAACGGGAAAAGCGGGGGCGGGGGCGGAGCATACAAAGAAAACGGTGGCCTAAAACTGCTGTCAAGCACTTCGCAGAGTTCTGAAGTCGTACAATCCGAGGTTGGAACTTTGAATTCGTTGAAGGAAACAAACGGAGGCAGTCCAAATGTCTCGGGGTCAGAAGTGACTAGCACGTATTCACAGGGAGGTCTTGATAGCTTTACTGTCAACCATATCGCTTCTTCAGTCCACTCTTTGGGAGACATGATCGATACTGAACACGGTATCATCATGCCAACAAAATGGTTTGCAACAGCTGTCACTAGCAGACAGCTGTTGCAACCTTAA 1026 0.4464 MAMQPLYLKEHEGIVHNSVGQYSSANSAPWWSSNAYGSQSVYGVGDSCGQIKPFSLELSNYMDQLAPTPTKNLVRGVEQLFDKGHTNQFTIFPDDCKMSLDAQNHQATLSLQSSYAVAEPYNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRIMLPLSMTSDDGPTYVNAKQYNGIIRRRQSRAKAVQQNKLIKRSKPYMHESRHLHAMRRPRGCGGRFLNTKVSANGNGKSGGGGGAYKENGGLKLLSSTSQSSEVVQSEVGTLNSLKETNGGSPNVSGSEVTSTYSQGGLDSFTVNHIASSVHSLGDMIDTEHGIIMPTKWFATAVTSRQLLQP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00754 341 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Vifa3g00754 341 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Vifa3g00754 341 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 224 IPR001289 GO:0003700|GO:0006355
Vifa3g00754 341 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
Vifa3g00754 341 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Vifa3g00754 341 Gene3D - 167 228 - -
Vifa3g00754 341 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 88 290 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00754 Vifa-Chr3 162767587 162769485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00754 24 333 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.508 4.42e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vifa3g00754 CBFB_NFYA 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00754 K08064 - gmx:100808195 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03335 5 1101215574 1101217709 Vifa3g00754 3 162767587 162769485 PCT