Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00752 ATGAACAACACAGCCGATTCATCTGGATTCTTTGGCTCAAATGACATAAGTGGATTTGGCTATGGCATAGGAATTTCAATTGGAATTCTCTTACTCATCACAACAATCACACTCACTTCATACTTTTGTGCAAGATCACAAGTTCCAAATGCTCCTAGAAGAAGAAACAACAACAACACCTCTCAATTTCTTGAGCCACAACATTCAATACTTGATTTAGGATTAGATGAAGAAACAATCAAGAGTTATCCAAAGATGCTGTATTCTGAAATGAAGCTTAGAAAAAATGATTCAACATCAACATGTTGTTCTATATGTTTGGGTGATTACAAAGGAAGTGACACGCTTAAGGTTTTGCCAGATTGTGAACATTTGTTTCATCTTAAGTGTATAGAACCTTGGTTAAGGTTGCATCCCACTTGTCCTCTTTGTAGAACTTCACCTATTCCAACACCTCTTTCAACACCTTTGGCTGAAGTTGTTCCATTGGCCACAAGGAGAGATTCATCATAG 513 0.3723 MNNTADSSGFFGSNDISGFGYGIGISIGILLLITTITLTSYFCARSQVPNAPRRRNNNNTSQFLEPQHSILDLGLDEETIKSYPKMLYSEMKLRKNDSTSTCCSICLGDYKGSDTLKVLPDCEHLFHLKCIEPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRDSS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00752 170 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 159 IPR045899 -
Vifa3g00752 170 Pfam Ring finger domain 103 145 IPR001841 -
Vifa3g00752 170 SMART ring_2 103 144 IPR001841 -
Vifa3g00752 170 SUPERFAMILY RING/U-box 79 150 - -
Vifa3g00752 170 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Vifa3g00752 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 149 IPR013083 -
Vifa3g00752 170 FunFam E3 ubiquitin-protein ligase ATL6 64 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00752 Vifa-Chr3 161844165 161844677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00752 6 165 C3H Transcription Factor Family AT2G35910 62.963 2.85e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00752 - - gmx:100796149 243.047