Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00746 ATGAGCAATGGCACTTTGGCAAGTTTACTTTTCAATGCTGATGAGAAACAGAAACCAAGTTGGAAACTAAGGCTTGAACTTGCAATAGGAATAGCAAGGGGACTTGTGTATTTACATGAAGAGTGCATTACTAGGATCATCCACTGTGACATAAAGCCTCAAAATATACTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGATATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGATTGGGCTTATGATTACTACAAGGATGGTGCTGTAGATGCATTGTGTGTTCAAGAGGATCCAGTTCTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTATAATTTAA 591 0.3723 MSNGTLASLLFNADEKQKPSWKLRLELAIGIARGLVYLHEECITRIIHCDIKPQNILLDDYFNARISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQDMEQEDEEKAILTDWAYDYYKDGAVDALCVQEDPVLRPSMRNVIHMLEGTVEVQVPPYPSQISIQYSII 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00746 196 SMART serkin_6 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00746 196 Gene3D Transferase(Phosphotransferase) domain 1 1 182 - -
Vifa3g00746 196 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Vifa3g00746 196 Pfam Protein kinase domain 4 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00746 196 SUPERFAMILY Protein kinase-like (PK-like) 1 190 IPR011009 -
Vifa3g00746 196 ProSiteProfiles Protein kinase domain profile. 1 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00746 196 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 186 - -
Vifa3g00746 196 FunFam Putative receptor-like protein kinase 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00746 Vifa-Chr3 159118357 159119018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00746 1 176 Receptor kinase-like Gene Family AT4G33430 37.500 2.01e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa3g00746 Pkinase 5.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00746 - - mtr:11434023 320.472