Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00745 ATGCAGCAAAGTTTGCAAAGTGAACTCTGTGTTTGTGTACCGAAGGTCAGGGACTTATTAGTGAATTACTCGTTATTAGATCGCTTACCGAATCGTGGTCTCGCTGGAATTGCACGTCCAAACAACAAGACTGGAGACACCTCCTTGTCAATCGTCTCTGAGCTTTCCGATCTCCGCCGCTCTCAATCCGTGTCACTCCCGAACCCAAAGAGTTCAACAAAGAGTGAAGGTTGGACCACAGTATGGTCCAAACCTGATAATATATGTCTTTATACTGTCAGTTCTGGTAGTGGTGTTTGTGGATACAATAGCTTCTGCACTTTGGGACAGGATAAGAGACCAACGTGTCAGTGTCCAAAAAGTTACTCTCTAGTTAATCCTGATGATCCATATGGTAGCTGCAAGCCAGATTTTATACAAGGATGTGAAGAAGATGAACTGAGTAAAAGAAAGGATCTCTATGACTTTGAGGTTTTGATTAACACTGATTGGCCTTTCTCAGATTTTGTGCTTCAAAGGCCTTTTACTGAAGAACTGTGTAAAGAAGCTTGTATGGGAGATTGCATGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGATGAAGAAGTTACCACTCTCAAATGGGAAAGTTGATCCAACACTTAATGGTGCTAAGGCTTTCTTGAAAGTGAGAAAAGATAATACCTCCCTCCAGTCCTTTGATTTTCCTCCATTTCCAATCATTGCGAACAAGAATAATAATAGGGAAACGTTGGTTTTGGTTGTTTCTGTGCTTTTTGGTAGCTCTGCTATTCTCAATGCTGTATTGCTTGTAGCAATATGTTTCAGCACCTCCATGATTGTTCAGTACAAGAAGAAGCTTAGAAGAGTTAGCAGAAGTGAAACTAGTGTTGAAACCAATTTGCATTGCTTCACTTACGAAGAGCTTGAAGAAGCTACTAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATAGTTTATGAAGGAGTCGTCAACAACAACACATGTTCCGAAACTCGTGTGGCTGTGAAAAAGTTGAACAATTTTTTGTTGGATCAAGCTCATAGAGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCATAAGAACTTAGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTTAA 1170 0.4043 MQQSLQSELCVCVPKVRDLLVNYSLLDRLPNRGLAGIARPNNKTGDTSLSIVSELSDLRRSQSVSLPNPKSSTKSEGWTTVWSKPDNICLYTVSSGSGVCGYNSFCTLGQDKRPTCQCPKSYSLVNPDDPYGSCKPDFIQGCEEDELSKRKDLYDFEVLINTDWPFSDFVLQRPFTEELCKEACMGDCMCSVAIFRLGDSCWMKKLPLSNGKVDPTLNGAKAFLKVRKDNTSLQSFDFPPFPIIANKNNNRETLVLVVSVLFGSSAILNAVLLVAICFSTSMIVQYKKKLRRVSRSETSVETNLHCFTYEELEEATNGFDKELGRGAFGIVYEGVVNNNTCSETRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00745 389 SUPERFAMILY Protein kinase-like (PK-like) 298 386 IPR011009 -
Vifa3g00745 389 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 75 388 - -
Vifa3g00745 389 ProSiteProfiles Protein kinase domain profile. 317 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00745 389 Pfam Protein tyrosine and serine/threonine kinase 319 386 IPR001245 GO:0004672|GO:0006468
Vifa3g00745 389 Gene3D Phosphorylase Kinase; domain 1 279 389 - -
Vifa3g00745 389 FunFam S-receptor-like serine/threonine-protein kinase 286 389 - -
Vifa3g00745 389 ProSitePatterns Protein kinases ATP-binding region signature. 323 350 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00745 Vifa-Chr3 159116525 159118335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00745 234 388 Receptor kinase-like Gene Family AT4G23220 31.210 1.32e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa3g00745 PK_Tyr_Ser-Thr 2.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00745 - - gmx:100815462 459.529