Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00740 ATGTATTTTGCAACCACACTGTTCCTCCTCTTTTTATCATACATTGCTATAACACTATTTCGTAGAACTAAAACACATATCAATCTTCCACCAGGGCCTTCACTTTTTACCCTTATGCTAAATGCTTCTGAATTAGGAAAACTAAAACCACAACACTCGTTAGCCAAACTTTCCAAAATATATGGTCCAATAATGCATTTGAAGTTAGGTCAAATAACAACCTTTGTAATTTCATCACCAGAAATTGCACAACAAGTGCTTCAAACTCATGATCTCTTCCTCTCAGACCGAACAATTCCTCAAGCTGTAGCAGTTCTTGATCATCAGCATTTTAGCTTACCCTTTATGCCAGCTTGCGATCTTTGGAGAGACCTTAAAAAAATAAGCAAAAATCATTTGTTTTCCAGCAAAACACTTGATGCAAGTTATCAACTTAGGTGTAACAAACTTCAAGACTTTTTATGTGATATTGATAGAAGCAGTATAAGGGGTGAAGCAGTAGATATTGGAAGAGCTGCTTTTAAGACTACATTGAACTTTTTGTCAAACACTTTTTTCTCTATGGATTTTGCTAATTCTGCTGGTGAAACTGATGAGTATAAAGATATAATTGAAAATCTTGTGAGAGTCATAGGAACACCAAACTTAGTTGATTTTTTTCCCGCTTTAAGGATGTTTGATCCACAAGGTATTAAAGGCATATCAGCTACTTATCTTGAAAAATTGTTGCAAATTATTGATTCCTATACTACCAAAAGATTGAAGTTAAGAGAAGACGAAAATTATATCCCAAATGATGATATGCTAGACATGCTTCTCAACATCTCTCAAGAGAATGGGCAAAAGATGGACAATACAAAAATTAAACATTTGTTTCTGGATTTATTTGTCGCGGGAACTGATACAACTTCCTACACAATAGAACGAGCCATGGCTGAATTAATTCACAACCCACATGTTATGGCAAAAGCTAAAGAAGAGCTTGAACAAGGCCAATATTTTCAATTCACACCATTTGGTGGTGGTAGAAGAATGTGTCCTGGAATGCCACTTGCTATACGAATGTTACATACGATGTTAGGATCATTGATTAATTCTTTTGACTGGAAAAAGGAAAACAGAGATAGAGACATCGATCAACCATTGAGAGCTATTCCTATTAGAGTAAATAAACTGTAA 1179 0.3494 MYFATTLFLLFLSYIAITLFRRTKTHINLPPGPSLFTLMLNASELGKLKPQHSLAKLSKIYGPIMHLKLGQITTFVISSPEIAQQVLQTHDLFLSDRTIPQAVAVLDHQHFSLPFMPACDLWRDLKKISKNHLFSSKTLDASYQLRCNKLQDFLCDIDRSSIRGEAVDIGRAAFKTTLNFLSNTFFSMDFANSAGETDEYKDIIENLVRVIGTPNLVDFFPALRMFDPQGIKGISATYLEKLLQIIDSYTTKRLKLREDENYIPNDDMLDMLLNISQENGQKMDNTKIKHLFLDLFVAGTDTTSYTIERAMAELIHNPHVMAKAKEELEQGQYFQFTPFGGGRRMCPGMPLAIRMLHTMLGSLINSFDWKKENRDRDIDQPLRAIPIRVNKL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00740 392 PRINTS E-class P450 group I signature 346 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00740 392 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00740 392 PRINTS E-class P450 group I signature 336 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00740 392 Gene3D Cytochrome P450 331 391 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00740 392 Pfam Cytochrome P450 330 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00740 392 Pfam Cytochrome P450 30 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00740 392 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 339 348 IPR017972 GO:0005506|GO:0016705
Vifa3g00740 392 Gene3D Cytochrome P450 22 330 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00740 392 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 330 374 - -
Vifa3g00740 392 SUPERFAMILY Cytochrome P450 21 374 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00740 Vifa-Chr3 157465135 157466695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00740 30 330 Cytochrome P450 AT3G61040 41.118 4.46e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00740 - - gmx:100792017 377.096