Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00735 ATGTTGAGAGCAAAGAAAAACCAAATTGAGCATGGTGATCCTATTGGATGCCCTCATGACTTTCATCTAATCAAAGTGAAGCCAGCGCCTGCTATGACATATTTCCAAAATGCTTCTGAATTAGGAAAACAAAAGCCACAACATTTGTTAGCCAAATATTCCAAAATATATGGACCAATAATGCATTTGAAGTTAGGTCAAATAACGACCTTTGTAATTTCATCACCAGAAATTGCACAACAAGTGCTTCAAACTCATGATCTCTTCCTCTCAGACCGAACTATTCCTCAAGCTGTAGCAGTTCTTGATCATCAGCATTTTAGCTTACCCTTTATGCCAGCTTGTGATCTTTGGAGAGACCTTAAAAAAATATGCAAAAACCATTTGTTTTCCAGCAAAACACTTGATGCTAGTTATCAACTTAGGTGTAACAAGCTTCAAGACTTTTTATGTGATATTGATAGAAGCAGTATAACGGGTGAAGCAGTAGATATTGGAAGAGCTGCTTTTAAGACTACATTGAACTTTTTGTCCAACACTTTTTTTTCTATGGATTTTGCTAATTCTGCTGGTGAAACTGATGAGTATAAAGATATCATTGAAAATCTTGTGAGAGTCATAGGAACACCAAACTTGGTTGATTTTTTTCCTGCTTTAAGGATGTTTGATCCACAAGGTATTAAAGGAATCTCAGCTACTTATCTTGAAAAGTTGTTGCAAATTATTGATTCCTATACGACCAAAAGAATGAAGTTAAGAGAAGACGAAAATTATATCCTAAATGATGACATGTTAGACATGCTTCTGAACGTCTCTCAAGAGAATGGGCAAAAGATGGACAACATAAAGATTAAACATTTGTTTCTGGATTTATTTGTCGCGGGGACTGATACAACTTCCTACACAATAGAACGAGCCATGACTGAACTAATTCACAACCCACATGTTATGGCAAAAGCTAAAGAAGAGCTTGAACAAGTAATTGGTATAGGAAATTCAATTGACGAATCAGATATTACTAAACTCCCATACTTGCAAGCAGTAGTAAAAGAAACGTTACGTTTGCACCCATCAGCTCCACTTTTACTACCAAGGAAAGCTAGGATAGATGTAAAAATTTGTGGATACACTATTCCACAAGGTTCACAGATTCTAGTTAATGAATGGGCCATGGGAAGAAATCCTAGCATTTGGGATAATCCAAATATGTTTTTTCCTGAAAGATTTCTTGGATCAGAAATTAATTTCAAGGGCCAATATTTTCAATTCACACCATTTGGTGGTGGGAGAAGAATGTGTCCTGGAATGCCACTTGCTATACGAATGTTACATACGATGTTAGGATCATTGATTAATTCTTTTGACTGGAAAAAGGAAAACAGAGATAGAGACATCGATCAACCATTGCGAGCTATTCCTATTAGAGTAAATAAACTGTAA 1440 0.3583 MLRAKKNQIEHGDPIGCPHDFHLIKVKPAPAMTYFQNASELGKQKPQHLLAKYSKIYGPIMHLKLGQITTFVISSPEIAQQVLQTHDLFLSDRTIPQAVAVLDHQHFSLPFMPACDLWRDLKKICKNHLFSSKTLDASYQLRCNKLQDFLCDIDRSSITGEAVDIGRAAFKTTLNFLSNTFFSMDFANSAGETDEYKDIIENLVRVIGTPNLVDFFPALRMFDPQGIKGISATYLEKLLQIIDSYTTKRMKLREDENYILNDDMLDMLLNVSQENGQKMDNIKIKHLFLDLFVAGTDTTSYTIERAMTELIHNPHVMAKAKEELEQVIGIGNSIDESDITKLPYLQAVVKETLRLHPSAPLLLPRKARIDVKICGYTIPQGSQILVNEWAMGRNPSIWDNPNMFFPERFLGSEINFKGQYFQFTPFGGGRRMCPGMPLAIRMLHTMLGSLINSFDWKKENRDRDIDQPLRAIPIRVNKL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00735 479 SUPERFAMILY Cytochrome P450 37 462 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 Pfam Cytochrome P450 28 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 40 461 - -
Vifa3g00735 479 Gene3D Cytochrome P450 22 471 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 PRINTS E-class P450 group I signature 346 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 PRINTS E-class P450 group I signature 54 73 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Vifa3g00735 479 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00735 479 Coils Coil 235 255 - -
Vifa3g00735 479 CDD CYP76-like 54 473 - -
Vifa3g00735 479 FunFam Geraniol 8-hydroxylase 235 470 - -
Vifa3g00735 479 Coils Coil 476 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00735 Vifa-Chr3 157355018 157357115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00735 30 479 Cytochrome P450 AT2G45550 41.612 4.49e-130 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00735 - - gmx:100792017 598.971