Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00730 ATGAATTCCGAAATGTATTTTGCAACCACAATGTTCCTCCTCTTTTTATCATACATTGCTATAATACTATTTCGTAGAACCAAAAACCATATTAATATTCCACCAGGGCCTTCACTTCTCACCCTTATGCTAAATGCTTCTGAATTAGGAAAACAGAAACCTCAACACTTGTTAGCCAAACTTTCCAAAATATATGGTCCAATAATGCGTTTGAAGTTAGGTCAAATAACAACCTTTGTAATTTCATCACCAGAAATTGCACAAGAAGTGCTTCAAACTCATGATCTCTTCCTCTCAGACCGAACTATTCCTCAAGCTGTAGCAGTTCTTGATCATCAGCATTTTAGCTTACCCTTTATGCCAGCTTGTGATCTTTGGAGAGACCTTAAAAAAATATGCAAAAATCATTTGTTTTCCAGCAAAACACTTGATGCTAGTTATCAACTTAGGTGTAACAAGCTTCAAGACTTTTTATGTGATATTGATAGAAGCAGTATAACGGGTGAAGCAGTAGATATTGGAAGAGCTGCTTTTAAGACTACATTGAACTTTTTGTCAAACACTTTTTTCTCTATGGATTTTGCTAATTCTGCTGGTGAAACTGATGAGTATAAAGATATCATTGAAAATCTTGTGAGAGTCATAGGAACACCAAACTTGGTTGATTTTTTTCCTGCTTTAAGGATGTTTGATCCACAACGTATTAAAGGAATATCAGCTTCTTATCTTGAAAAGTTGTTGCAAATAATTGATTCATATACTATCAAAAGATTGAAGTTAAGAGAAGACGCAAATTACATCCCAAATGATGACATGTTAGACATGCTTCTCAACATCTCTAATGAGGATGGCCAAAAGATGGACAACACAAAGATTAAACATTTGTTTTTGGATTTATTTGTCGCGGGAACTGATACAACTTCCTACACAATAGAACGAGCTATGGCTGAATTAATTCACAATCCACATGTAATGTCAAAAGCTAAAGAAGAGCTTGAACACGTAATTGGTATAGGAAATTCAATTGAGGAATCAGATATTACCAAACTCCCATATTTGCAAGCGGTAGTAAAAGAAACATTACGTTTGCATCCATCTGCTCCACTTTTACTACCAAGGAAAGCTAAGATAGATGTGCAAATTCATGGATACACTATTCCACAAGGTTCACAGGTTCTAGTTAATGAATGGGCCATGGGAAGAAATCCTAGCATTTGGGATAATCCAAATATGTTTTTTCCTGAAAGATTTCTTGGGTCGGAAATTAATTTCAAGGGCCAATACTTTCAATTCACACCATTTGGTGGTGGGAGAAGAATGTGTCCTGGTATGCCACTTGCTATACGAATGTTACACACGATGTTAGGATCATTGATTAATTCTTTTGACTGGAAAATGGAAAATGGAGATAGAGATATTGATCAACCATTGCGAGCTATTCCTACTAGAGTAAATAAAGTGTAA 1464 0.3538 MNSEMYFATTMFLLFLSYIAIILFRRTKNHINIPPGPSLLTLMLNASELGKQKPQHLLAKLSKIYGPIMRLKLGQITTFVISSPEIAQEVLQTHDLFLSDRTIPQAVAVLDHQHFSLPFMPACDLWRDLKKICKNHLFSSKTLDASYQLRCNKLQDFLCDIDRSSITGEAVDIGRAAFKTTLNFLSNTFFSMDFANSAGETDEYKDIIENLVRVIGTPNLVDFFPALRMFDPQRIKGISASYLEKLLQIIDSYTIKRLKLREDANYIPNDDMLDMLLNISNEDGQKMDNTKIKHLFLDLFVAGTDTTSYTIERAMAELIHNPHVMSKAKEELEHVIGIGNSIEESDITKLPYLQAVVKETLRLHPSAPLLLPRKAKIDVQIHGYTIPQGSQVLVNEWAMGRNPSIWDNPNMFFPERFLGSEINFKGQYFQFTPFGGGRRMCPGMPLAIRMLHTMLGSLINSFDWKMENGDRDIDQPLRAIPTRVNKV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00730 487 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 11 470 - -
Vifa3g00730 487 SUPERFAMILY Cytochrome P450 34 471 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 Pfam Cytochrome P450 34 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Vifa3g00730 487 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 FunFam Cytochrome P450 76C4 25 478 - -
Vifa3g00730 487 Gene3D Cytochrome P450 26 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00730 487 CDD CYP76-like 62 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00730 Vifa-Chr3 155967869 155969441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00730 10 485 Cytochrome P450 AT2G45550 41.667 3.24e-138 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00730 - - gmx:100792017 630.557