Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00724 ATGGGAAACAACTGTGTTGGTTCGGGAACCTCGCAATCAAAGGATTTGTCATCACCCTCAACTCTTCCAAGTCCTTCTTGCTGGCCGCGTGGTGGAAGGAAGAAAGATACATCTGATGCACACAAAACCAGTCCAACAAAAGCTATAGAAACTGTTCAAAACAAGGCACCACAGGTAGTGAAGATTGAGAATGAGGATGTAAAGCCATCGCAGCAACAAAAGCCGCAAACGAATGAAGGTGGTGTTGCTACACCTGCAAAACAAAAGAGACCTCAAAATGTGAAGAGACTAGCAAGTGCAGGACTCAAAGCAGATTCAGTTTTGCAGCGAAAAACGGTTAGTCTTAAGGAGTTTTATAATTTGGGAAAAAAACTTGGACAAGGGCAATTCGGAACAACGTTTCTTTGTGTGGAGAAGGCAACTGGGAAAGAGTATGCGTGTAAATCTATCTTGAAGCGGAAGTTGTTGACAGATGAGGATGTGGAAGATGTGAGGAGAGAGATTCAGATTATGCATCACTTGGCTGGGAGTCCAAGCATAGTTTCGATTAAAGAAGCTTCTGAAGATGCTGTTGCTGTTCATGTTGTTATGGAGTTGTGTTCGGGTGGTGAGCTTTTCGATAGGATTGTGGAAAGAGGGCATTATACGGAGAGAAAAGCCGCTAAACTTGCAAGGACTATTGTTGGTGTTATTCAGTCATGTCATTCTCTCGGAGTAATGCATCGTGATCTTAAGCCGGAGAATTTTCTTTTTGTTAATCAGCAGGAAGATTCTCCTCTTAAGGCAATAGATTTTGGACTATCTGCATTTTTTAAGCCAGGTGACATTTTCAATGATGTAGTAGGTAGTCCATATTATGTTGCACCTGAAGTTTTACGCAAGCGATATGGCCCAGAAGCAGATGTTTGGAGCGCCGGTGTGATCTTGTACATTCTCTTATGTGGGGTGCCTCCATTTTGGGGTGAATCGGAGCAGGAGATATTTGAGGCCATTTTGCATAGTGATCTTGATTTCGCATCAGATCCATGGCCTGGTATATCTGAAAGTGCAAAAGACTTGGTTAAGAAGATGCTTGTTAGAGATCCTAGTAAACGGTTATCAGCTTTTGACGTTCTTCGTCACCCCTGGATTCAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCAGAAGAAGAAATTGCTGGTTTGAAAGAAATGTTTAAGATGATCGATACGGACAATAGTGGTTACATTACATTTGAAGAACTCAAAGTTGGACTGAAAAAATTTGGTGCCAATCTCAATGAATCTGAAATTTACGATCTAATGCAATCTGCAGATGTTGATAATAGTGGTACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGATAGGGAAGATCATTTAGTTGCCGCATTCTCATATTTCGATAAAGATGGAAGCGGATACATCACTAGAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCCTAGGCGACGTTGGCTTGGAGGAAATGATCCGAGAAGCTGACCAGAATAATGATGGACGAATAGACTACAATGAATTTGTGGCTATGATGCAGAGAGGGAATGCAGAAATCGGTAAGAGGGGTCGAAAGGGTAGCCGTAGTTTAAGCATTGCATTTAGGGAGGCACTACCAGTATGCTAA 1671 0.4159 MGNNCVGSGTSQSKDLSSPSTLPSPSCWPRGGRKKDTSDAHKTSPTKAIETVQNKAPQVVKIENEDVKPSQQQKPQTNEGGVATPAKQKRPQNVKRLASAGLKADSVLQRKTVSLKEFYNLGKKLGQGQFGTTFLCVEKATGKEYACKSILKRKLLTDEDVEDVRREIQIMHHLAGSPSIVSIKEASEDAVAVHVVMELCSGGELFDRIVERGHYTERKAAKLARTIVGVIQSCHSLGVMHRDLKPENFLFVNQQEDSPLKAIDFGLSAFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLCGVPPFWGESEQEIFEAILHSDLDFASDPWPGISESAKDLVKKMLVRDPSKRLSAFDVLRHPWIQKMALRVIAENLSEEEIAGLKEMFKMIDTDNSGYITFEELKVGLKKFGANLNESEIYDLMQSADVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFSYFDKDGSGYITRDELQKACEEFGLGDVGLEEMIREADQNNDGRIDYNEFVAMMQRGNAEIGKRGRKGSRSLSIAFREALPVC 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00724 556 SUPERFAMILY EF-hand 388 529 IPR011992 -
Vifa3g00724 556 Pfam Protein kinase domain 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00724 556 Gene3D - 378 533 - -
Vifa3g00724 556 ProSitePatterns Protein kinases ATP-binding region signature. 125 152 IPR017441 GO:0005524
Vifa3g00724 556 ProSiteProfiles Protein kinase domain profile. 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00724 556 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Vifa3g00724 556 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Vifa3g00724 556 ProSiteProfiles EF-hand calcium-binding domain profile. 503 533 IPR002048 GO:0005509
Vifa3g00724 556 CDD EFh 397 456 IPR002048 GO:0005509
Vifa3g00724 556 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Vifa3g00724 556 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Vifa3g00724 556 PANTHER SERINE/THREONINE-PROTEIN KINASE 105 523 - -
Vifa3g00724 556 SUPERFAMILY Protein kinase-like (PK-like) 118 384 IPR011009 -
Vifa3g00724 556 ProSitePatterns EF-hand calcium-binding domain. 511 523 IPR018247 -
Vifa3g00724 556 FunFam Calcium-dependent protein kinase 1 359 531 - -
Vifa3g00724 556 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Vifa3g00724 556 SMART efh_1 468 496 IPR002048 GO:0005509
Vifa3g00724 556 SMART efh_1 432 460 IPR002048 GO:0005509
Vifa3g00724 556 SMART efh_1 396 424 IPR002048 GO:0005509
Vifa3g00724 556 SMART efh_1 502 530 IPR002048 GO:0005509
Vifa3g00724 556 MobiDBLite consensus disorder prediction 65 83 - -
Vifa3g00724 556 Gene3D Transferase(Phosphotransferase) domain 1 205 377 - -
Vifa3g00724 556 FunFam calcium-dependent protein kinase 1 205 383 - -
Vifa3g00724 556 Gene3D Phosphorylase Kinase; domain 1 121 204 - -
Vifa3g00724 556 CDD EFh 468 528 IPR002048 GO:0005509
Vifa3g00724 556 MobiDBLite consensus disorder prediction 1 92 - -
Vifa3g00724 556 Pfam EF-hand domain pair 397 457 IPR002048 GO:0005509
Vifa3g00724 556 Pfam EF-hand domain pair 468 528 IPR002048 GO:0005509
Vifa3g00724 556 FunFam Calcium-dependent protein kinase 1 121 204 - -
Vifa3g00724 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vifa3g00724 556 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Vifa3g00724 556 MobiDBLite consensus disorder prediction 1 25 - -
Vifa3g00724 556 CDD STKc_CAMK 118 376 - -
Vifa3g00724 556 SMART serkin_6 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00724 Vifa-Chr3 155499521 155502036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00724 57 547 EF-hand Containing Proteins AT3G10660 69.923 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g00724 Pkinase 6.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00724 K13412 - gmx:100783079 904.049