Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00716 ATGGCTCAACTGGTCTCACATTCCATTTTCATATCATCACAAACACCTCTTATTTCTCAAGTTATGGAGAAAGGAAATAATATATCCAGGACAATGTCAGATCAGCTTGTGGAGTCTGTAGCGGCGGCTCTAAAGTCGCCGCAGTCGAGCGATCACTCTACAAACTCAGCCTTAGAAGGGAGCGGAGGATTGTCGAGAAAATCAAGCCGGAGAATAACCTCGGCCTCACCGGGACGCGGAGGGAAGAACACGCATATAAGGAAAACAAGAAGCGCTCAAATGAAGATTGATGTTGATGAACTCACTAGTGGCGCAGCTCTGAGCAGAGCTTCAAGCGCTAGCTTGGGTCTATCGTTTTCTTTCACTGGCTTCAATATGCCTCCAGATCAAATTGCTGATACCAAACCTTTCAGTGATGATGACATCATTCCTGAGGATATTGAAGCTGGAATTAGGACAAAGACAAAGTTTCAAACAGAGCCTACTATTCCCATAAGTCTAAAGTTCAGTGATGTGACCTACAAGGTAGTTCTCAAAGGCATGACATCAAGTGTTGAGAAAGATATCTTGAATGGGATCAGTGGTTCTGTAAATCCAGGTGAAGTTTTGGCATTGATGGGTCCCTCAGGAAGTGGAAAGACAAGTCTTTTAAATCTCCTTGGAGGAAGGATAAGTCACCCAACAATTGGTGGTTCTATCACTTACAATGAACAATCATACTCCAAGTTCCTTAAGAGCAGGATAGGATTTGTGACGCAAGATGATGTTTTGTTTCCTCACCTAACTGTGAAAGAGACGTTGACATACGCAGCACGGTTACGGCTTCCAAAGACCTTCACAAAAGAGCAAAAGGAAAAAAGAGCTTTAGATGTCATCTATGAGCTTGGCTTGGAGAGGTGCCAAGATACTATGATTGGCGGTTCATTTGTTCGCGGAGTATCGGGTGGAGAGAGGAAGAGAGTTTGTATCGGCAATGAGATCATAATCAACCCTTCCATTTTGTTTCTTGACGAACCAACTTCTGGCTTGGATTCAACAACAGCCTTGAAGATTGTTCAGATGCTGCAAGACATAGCAGAGGCTGGTAAAACAGTAGTGACGACAATTCACCAACCATCAAGTAGACTCTTCCACAAATTCGACAAGTTGATCCTTCTTGGGAAAGGGAGTTTGCTTTACTTTGGAAAAGCATCAGAAGCGATGAATTACTTCCAATCTATAGGATGTTCACCGCTTATTTCCATGAATCCAGCCGAATTTTTGCTAGACCTTGCGAATGGGAACATAAACGATGTTTCCGTACCATCAGAGTTGGAAGATAGAGTGCAAATCGGAAATGCAGAAGTTGAAAAGTATAACGGAAAACCATCACCAGCAGTAGTCCATGAGTATCTAGTTGAGGCATATGAGTCTCATGTTGCGGAAACGGAGAAGAAAAAAACAATGGTTTCTATGCCTCTGGACGAAGCTTTGAAGGCCAAAGCGAGTTCTCCTAAAAGACAATGGGGAGCGAGTTGGGACGAACAATTTTCTATACTTTTTTGGAGAGGAATCAAGGAAAGAAGGCATGACTATTTTAGCTGGTTGAGAATCACACAAGTTTTATCGACTGCAGTCATCTTAGGATTACTCTGGTGGCAATCAGATACTAAAAACCCAAAAGACCTGCAAGATCAGGCAGGATTACTTTTCTTTATTGCTGTCTTCTGGGGATTCTTTCCGGTTTTTACAGCAATATTTACATTTCCTCAAGAGAGAGCGATGTTGAATAAGGAACGTGCCGCAGATATGTACAGATTAAGTGCATACTTCCTTGCTAGAACAACAAGCGACCTTCCGTTAGACCTGATATTACCGGTGCTTTTTCTGCTTGTTGTTTACTTCATGGCTGGTTTGAGACTAAGTGCTGCTCCTTTTTTCTTCACCATCCTTACTGTTTTCCTCTGCATCATTGCAGCACAGGGTCTTGGACTTGCTATCGGTGCTACGCTTATGGATCTGAAAAGAGCCACGACTTTGGCTTCAGTAACTGTGATGACCTTCATGCTGGCTGGAGGATTTTTCGTCCAGAGAGTCCCGATCTTCATTTCTTGGATCCGCTTCATGTCTTTCAACTACCACACTTACAAACTGTTACTCAAGGTGCAATATGAACATTTCACACCTATGGTAAACGGAGTTAAAATTGACAGTGGTTTAACAGAAGTAGCTGCTCTGATTGCTATGGTTTTCGGTTACCGTTTCTTGGCTTACCTTTCATTGCGACGAATGAAACTACAATAG 2283 0.4275 MAQLVSHSIFISSQTPLISQVMEKGNNISRTMSDQLVESVAAALKSPQSSDHSTNSALEGSGGLSRKSSRRITSASPGRGGKNTHIRKTRSAQMKIDVDELTSGAALSRASSASLGLSFSFTGFNMPPDQIADTKPFSDDDIIPEDIEAGIRTKTKFQTEPTIPISLKFSDVTYKVVLKGMTSSVEKDILNGISGSVNPGEVLALMGPSGSGKTSLLNLLGGRISHPTIGGSITYNEQSYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMNYFQSIGCSPLISMNPAEFLLDLANGNINDVSVPSELEDRVQIGNAEVEKYNGKPSPAVVHEYLVEAYESHVAETEKKKTMVSMPLDEALKAKASSPKRQWGASWDEQFSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSAAPFFFTILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQRVPIFISWIRFMSFNYHTYKLLLKVQYEHFTPMVNGVKIDSGLTEVAALIAMVFGYRFLAYLSLRRMKLQ 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00716 760 Pfam ABC transporter 190 341 IPR003439 GO:0005524
Vifa3g00716 760 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 167 413 IPR003439 GO:0005524
Vifa3g00716 760 Pfam ABC-2 type transporter 370 433 IPR043926 GO:0140359
Vifa3g00716 760 Gene3D - 166 407 IPR027417 -
Vifa3g00716 760 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 112 751 - -
Vifa3g00716 760 SMART AAA_5 199 390 IPR003593 GO:0016887
Vifa3g00716 760 MobiDBLite consensus disorder prediction 44 91 - -
Vifa3g00716 760 FunFam ABC transporter G family member 22 177 407 - -
Vifa3g00716 760 ProSitePatterns ABC transporters family signature. 313 327 IPR017871 GO:0005524|GO:0016887
Vifa3g00716 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 405 IPR027417 -
Vifa3g00716 760 Pfam ABC-2 type transporter 508 716 IPR013525 GO:0016020|GO:0140359
Vifa3g00716 760 CDD ABCG_EPDR 164 395 - -
Vifa3g00716 760 MobiDBLite consensus disorder prediction 44 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00716 Vifa-Chr3 153090561 153099250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00716 130 427 Calmodulin-binding Proteins AT2G36910 28.289 5.80e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00716 K05681 - gmx:100798801 1245.72