Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00705 ATGGCTGAAGTTGTTGTTCAAGAACCCGTTGCTGTCGTTTCAGATCCCTCTCAGATCGAAGTCAAGCTCTTTAACCGCTGGAGCTTTGACGACGTCCAGTTCTCTGATGTGTCTTTGAGTGATTACATTGGAGTTGCGGCAACCAAACATGCCACATACGTTCCTCACACTGCTGGTAGATACTCTGTTAAGAGGTTTAGAAAGGCTCAGTGTCCTATTGTGGAGAGGCTCACAAACTCTCTCATGATGCACGGGAGGAACAATGGAAAGAAGCTGAAGGCGGTTGGAATCATCAAGCATGCCATGGAGATCATTCATTTGCTAACTGACCAGAACCCGATTCAGGTCATTGTTGATGCCGTCGTCAACAGTGGTCCCCGGGAAGATGCTACTCGAATTGGTTCTGCTGGAGTTGTGAGAAGACAGGCAGTGGATATTTCACCCCTTCGCCGTGTTAATCAAGCAATCTATCTTCTCACTACTGGTGCACGTGAAGCTGCGTTCAGAAATATTAAGACAATTGCTGAATGTTTGGCTGATGAACTTATTAATGCAGCAAAAGGCTCATCAAACAGTTATGCAATCAAGAAGAAAGATGAGATTGAGAGAGTTGCCAAGGCAAATCGTTAA 630 0.454 MAEVVVQEPVAVVSDPSQIEVKLFNRWSFDDVQFSDVSLSDYIGVAATKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLKAVGIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00705 209 CDD uS7_Eukaryote 22 209 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vifa3g00705 209 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 209 IPR000235 GO:0006412
Vifa3g00705 209 ProSitePatterns Ribosomal protein S7 signature. 75 101 IPR020606 GO:0003723|GO:0003735|GO:0006412
Vifa3g00705 209 NCBIfam 30S ribosomal protein S7 20 209 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vifa3g00705 209 Gene3D Ribosomal protein S7 domain 3 209 IPR036823 -
Vifa3g00705 209 Pfam Ribosomal protein S7p/S5e 63 209 IPR023798 -
Vifa3g00705 209 FunFam 40S ribosomal protein S5 4 209 - -
Vifa3g00705 209 SUPERFAMILY Ribosomal protein S7 22 209 IPR036823 -
Vifa3g00705 209 PANTHER RIBOSOMAL PROTEIN S7 18 209 IPR000235 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00705 Vifa-Chr3 147882070 147884377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00705 20 209 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 91.053 4.85e-131 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00705 K02989 - gmx:100305898 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00705 3 147882070 147884377 Vifa3g00705 3 147882070 147884377 ECH