Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00698 ATGAGGGGAAGAAGCTACAGTTACAGTCCGTCACCTCCAAGGTATGGTCGAAGAGAACGCAGTCCTAGTCCTAGGGGGCGTTACGGAGGCCGTTACAGAGGTCGTGATAGAGATTTGCCAACAAGTCTTCTTGTCCGGAACCTGCACAAAGATTGCAGGCCGGAAGATCTGCACGATCCATTTGGCCAGTTTGGTCCTGTCAAGGATGTGTATCTGCCTCGTGATTATTATACAGGGGAGCCAAGGGGATTTGGGTTTGTTCAATTTGTGGACCCAGCTGATGCTGCAGATGCCAAATATCACATGGATGGTCAAATTCTTCTTGGTCGTGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGGAAGAAACCTCAAGAAATGAGAGCAAGAGAACGGGGAAGGAGATCTCCACGTCGTCGCCGTTCTCCTTCACCACGCTATGCACGGACATATTCTCCTAGTCCAGACTATTCCCCCTCTCCCAGACAAAGGCGATACTCCAGATATTCCAGGTCAATTTCACCAAGAGACGGGAGGTATAGGAGGGGATCATACTCCAGATCTCCTTATGCATCAAGAAGCCCCAGACGAAGTAGGAGTTACAGCAGGAGCATAAGTCCAGGATACTCTAGGTGA 636 0.4937 MRGRSYSYSPSPPRYGRRERSPSPRGRYGGRYRGRDRDLPTSLLVRNLHKDCRPEDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPQEMRARERGRRSPRRRRSPSPRYARTYSPSPDYSPSPRQRRYSRYSRSISPRDGRYRRGSYSRSPYASRSPRRSRSYSRSISPGYSR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00698 211 MobiDBLite consensus disorder prediction 1 37 - -
Vifa3g00698 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Vifa3g00698 211 MobiDBLite consensus disorder prediction 119 211 - -
Vifa3g00698 211 MobiDBLite consensus disorder prediction 187 211 - -
Vifa3g00698 211 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 40 201 - -
Vifa3g00698 211 SMART rrm1_1 42 115 IPR000504 GO:0003723
Vifa3g00698 211 SUPERFAMILY RNA-binding domain, RBD 41 145 IPR035979 GO:0003676
Vifa3g00698 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 112 IPR000504 GO:0003723
Vifa3g00698 211 Gene3D - 36 153 IPR012677 -
Vifa3g00698 211 MobiDBLite consensus disorder prediction 18 37 - -
Vifa3g00698 211 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00698 Vifa-Chr3 145079053 145080934 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00698 41 154 Eukaryotic Initiation Factors Gene Family AT4G34110 28.696 9.49e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00698 K12900 - gmx:100816913 193.741