Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00695 ATGGCAGTTTCACCTTTCCTCCTACTTCGACTCCGCTCACACTTGACTAAACCATTTCACCTCTTCAATTTCTCATTCTCCACCACCACACCGCCCAAGCCACCTCCAATTCAAGTTTCTCTCACCGACTCAATAGGTCGCGCCGTCTTCGCAACTCGCCCAATCCCTACCGGTGATCTCATCCACACCGCCGAACCCGCCGTCTCCCACCCCTCACCCTCCGCCCTTTATCCCGTCTGCTACTCTTGCCTCACCAGACTCCCCGCCTCCCTTCCTCAACGCTCCCCCTTTTGCTCTCACCATTGCCACCAACGCAGTAAGGAATATTACGATGTTGAGATGAAAGCGGATTGGACAGATTTTGATAACTATTGCCGGAACCAAGGTTTAAAATATCCCTTTTTGGTAAAGCGGTTGGTTTGCATGGTCATATCGGGAGTTTCTAGAAGTGACAGTCTTGACATACTTCAACCTGCCAATTTGACACCTGAGATGATTTTAGAGATGGAAAAAGGGTTCACCCTGCTAAGAAATGCCTTCACAAAGACACTTATTGCAGATGAACAGATTGCTTTTTTAACCAAGCAATGGTACATTGGTGTTTTGGCACGAATCCGAATCAATGCATTTCGCATTGAGTTGGCTGGTGGTGGATCATATGCAGATCTTCTTTCTTCTGCATTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTATATACTTCCTTCCTTCTATAATCATGATTGTGATCCTAATGCACACATTATATGGATCGATAATGCAAAGGCAAAACTAAAGGCCCTCCGGGACATTGATGAAGGTGAAGAACTGAGAATCTGCTATATTGATGCCAGTATGGACCGCGATGCTCGGCGAGAACTATTGTTTCAAGGTTTTGGTTTTCAGTGTAATTGTAGTAGATGCTTGCATGGTGATTAG 948 0.4589 MAVSPFLLLRLRSHLTKPFHLFNFSFSTTTPPKPPPIQVSLTDSIGRAVFATRPIPTGDLIHTAEPAVSHPSPSALYPVCYSCLTRLPASLPQRSPFCSHHCHQRSKEYYDVEMKADWTDFDNYCRNQGLKYPFLVKRLVCMVISGVSRSDSLDILQPANLTPEMILEMEKGFTLLRNAFTKTLIADEQIAFLTKQWYIGVLARIRINAFRIELAGGGSYADLLSSAFASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDNAKAKLKALRDIDEGEELRICYIDASMDRDARRELLFQGFGFQCNCSRCLHGD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00695 315 Gene3D - 128 209 - -
Vifa3g00695 315 ProSiteProfiles SET domain profile. 35 285 IPR001214 GO:0005515
Vifa3g00695 315 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 34 313 - -
Vifa3g00695 315 CDD SET_SMYD 224 311 - -
Vifa3g00695 315 Gene3D SET domain 48 311 IPR046341 -
Vifa3g00695 315 Gene3D - 79 127 - -
Vifa3g00695 315 Pfam SET domain 46 284 IPR001214 GO:0005515
Vifa3g00695 315 SUPERFAMILY SET domain 33 311 IPR046341 -
Vifa3g00695 315 SMART set_7 35 291 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa3g00695 SET 7.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00695 - - tpra:123906125 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00695 3 142865340 142869249 Vifa3g00695 3 142865340 142869249 ECH