Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00694 ATGTCTGCAACTACGAGAACAACAAGTTCATGGGCAGATTCTGCTGAAAATGCGGCCAATGGCTCGTCTGCACGGCCTGTCAAGCCTGCGTATGTTCCTCCGCATCTTCGGAACAGGTCGTTGGCTCCGGCTGAGCCTCCTTCTATGGTGGCTAATGCTAATGAGAGGGGTTTGGGTAATAATTGGGGTAGTTCGTCTAACTTCAATAAGCCTGAATTTGGCGCTGGTAGGCAAGGATATGGTTCTGGTGGTGGTGGTGGGTTTAACAATAGAGGAGGAGGAGGGGTAGTGAGGGAGCATGGTGGGAGACGTGAGGTGAATCCTTTTGAGAATGATGTTGATGAGTCTCTTAGTGAGCAGGAGAATACAGGGATTAACTTTGATGCTTATGATGATATCCCGGTTGAGACTAGTGGGGAGAATGTTCCCCCTCCTGTGAATACGTTTGCGGAAATAGATTTAGGTGATGCGTTGAATCAGAACATACAGAGATGCAAGTATGTGAAACCGACTCCGGTTCAGAGGTATGCTATACCTATTTCTCTTGCAGGGAGAGATTTGATGGCTTGTGCTCAGACTGGATCGGGAAAGACAGCTGCGTTTTGCTTTCCTATTATAAGTGGAATCCTTAGGGAGCAGTATGCTCAAAGACCCCGTGTGGCTCGCACTGCTTATCCTCTCGCACTTATTCTGTCTCCTACTCGGGAGCTCTCTTGTCAGATACATGACGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTTGTAGTTGCTTATGGAGGAGCACCGATCACCCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCAACTCCAGGACGACTAGTTGATTTGCTTGAGAGGGCTAGGGTGTCCTTACAGATGATAAGATATTTGGCTCTTGACGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGATATGCCTCCTCCAGGCATGCGACAGACACTGCTGTTTAGTGCAACATTTCCCAAAGAGATACAGAGACTTGCGTCGGATTTTCTTGCAAGTTACATATTTCTGGCTGTAGGAAGGGTTGGTTCAAGTACCGACCTAATTTCTCAACGAGTAGAATATGTGCTTGAGTCAGACAAAAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAAATGATGTGAATGGAAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGACGCATTGGAACACTGCTTGTGTGTTAATGGGTTTCCTGCAACTTGCATTCATGGTGACAGAACACAGCAAGAAAGAGAACAAGCATTGAGATCATTCAAGACCGGAAATACTCCAATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTTGATATTCCTCGGGTAGCACATGTGGTAAACTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACCGGCCGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCTTGGCTCACCCGATATGCAGCAAGGACTCCTTATGGTAGCAGTAGAAATAAGCGAACCGGAGGAGCCCGTTTTGGTGGTCGCGATGTTAGGAAGGAAACCTCATATAATAAAGGAACTGATTACTACGGCGGAGCTGGTGGCGGTGGTGGTTATGGGGTTCCCGCAAGCTATGGTGGAGGGTATGGTCAAGGTGTAACAAGTGCTTGGGATTAG 1815 0.4667 MSATTRTTSSWADSAENAANGSSARPVKPAYVPPHLRNRSLAPAEPPSMVANANERGLGNNWGSSSNFNKPEFGAGRQGYGSGGGGGFNNRGGGGVVREHGGRREVNPFENDVDESLSEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLISQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGSSRNKRTGGARFGGRDVRKETSYNKGTDYYGGAGGGGGYGVPASYGGGYGQGVTSAWD 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00694 604 CDD SF2_C_DEAD 374 510 - -
Vifa3g00694 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 540 IPR001650 -
Vifa3g00694 604 Pfam DEAD/DEAH box helicase 171 351 IPR011545 GO:0003676|GO:0005524
Vifa3g00694 604 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 118 540 - -
Vifa3g00694 604 MobiDBLite consensus disorder prediction 97 111 - -
Vifa3g00694 604 Gene3D - 365 543 IPR027417 -
Vifa3g00694 604 FunFam ATP-dependent RNA helicase RhlB 365 543 - -
Vifa3g00694 604 FunFam Probable ATP-dependent RNA helicase DDX4 110 364 - -
Vifa3g00694 604 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 147 175 IPR014014 GO:0003724
Vifa3g00694 604 SMART ultradead3 166 377 IPR014001 -
Vifa3g00694 604 SMART helicmild6 420 501 IPR001650 -
Vifa3g00694 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 518 IPR027417 -
Vifa3g00694 604 Pfam Helicase conserved C-terminal domain 386 501 IPR001650 -
Vifa3g00694 604 Gene3D - 105 364 IPR027417 -
Vifa3g00694 604 MobiDBLite consensus disorder prediction 54 72 - -
Vifa3g00694 604 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g00694 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 362 IPR014001 -
Vifa3g00694 604 CDD DEADc_DDX3_DDX4 148 368 IPR044763 GO:0003724|GO:0005524
Vifa3g00694 604 MobiDBLite consensus disorder prediction 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00694 Vifa-Chr3 141808577 141813685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00694 145 533 Eukaryotic Initiation Factors Gene Family AT3G19760 29.923 1.49e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00694 K11594 - gmx:100818326 915.99