Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00686 ATGGCACAGCAGCCCAACAAGCAGCTTCCCTGCGATTCTGATGGTGTTTGCATGATCTGTAACAAGCCGCCTCTAGAAATTGAAATTCTTCATTGCACAACATGTGCAACTCCATGGCATGTTCCATGTTTACCTCTCCTTCCCTTGAAAATCTTTGATTGGATATGCATTGATTGTTCTCAACCAGTGGATAACAACCCCTTCACTGATGCACCTACTTCTCCTATCGCATGTGGTCTTGGTTCTACAACCCATGCCATCGAGAATGATACTTCACTTACCGGTGAAGTAGCTAGGAAACATCACAAACTCATTGGTGGATCTTCTAAACCACCTATTGAAAACAACAACAATTGCAATGAGGTGTTTGATGTATTCAATAGTAGGCTTAACTGCACTTTCTGTCAGCACTTGCCCGAGAGACCTATCACTACACCATGCGGGCACAATTTTTGCCTGAAGTGTTTTAAGAAATGGATTAAGCAAGGAAAGCACAATTGCTCGAATTGTAGGGCTGAAATTCCAGCAAAGATGGTGAGTGATCCACAAATCAATGTACAACTGGCAACCACCATTCAAATAGCTAGATCAGAGAGTGTTGCACACCGGAAGATATTCGTGACGATTCCAAAAGATCATTTTGGACCGATTGTTGCTGAGAATGATCCAACAAGAAAACGCGGGGTTCTTGTTGGTGATACATGGGAGAGTTTGATGGAATGTATGCAATGGGGTGCTCATTTTCCCCATGATGCCAGGATTGCTGGTCAGAGTACTCATGGTGCTCAATCTGTTGCTCTATCTGGTGGTTACATTGACGACATAGATCATGGTAATTGGTTTCTTTATAGTGGAAGGGATCTTAGTGGTAGCAAACACACCCACAAAAATCAGTCCTTTGATAAAAAAATTGAGAGAAAGAACGAGGCTTTGAGACTCAGTTGCCAAAAAGGTTATCCTGTTCGCGTTGTAAGGTTCCACATGAAGAAGCGTTCCTCTTACGCACCAAAAGCAGGAGTGAGATACGATGGGGTTTATAGAATAGAAAAATGTTGGCGCAAAATTGGAAAACAAGGTCATAAGATTTGTAGGTATTTGTTTGTGAGGTGTGACAATGAGCCTGCTCCATGGAAAAGTGATTTATCCGGAGATCGTCCCTGTCCACTACCTATAATTGAGGAGTTGAACGGTGCTGTTGATATTACTGAAAGGAAGGGTGATCCATCATGGGACTTTGATGAGGAAAAAGACTGTTGGCTATGGAAGAAGCCTCCACCGCTAAGTAAGAAACCGGTGAATATTGTGGATCCTATCGATGAAACAAATATAAAAGTTGATATGACAAAAGAAAAAAGGGTGTCCTTAAAAATCAAGAATAAGCTTTTGAAAGAGCTTGCTTGCAATATTTGCCGCAAGGTGTTGGCCTCCCCTCTTACTACACCTTGTGCTCACAACTTTTGCAAAGCCTGCTTGGAAGGTGTTTTTTCAAGCCAAAGTCATATAAGGGAGAGGGCATCTCAAAGTGGATTTTCTTTGCGGACAAAGAAAAACATCATGAAATGTCCTACTTGTTCAGATGACCTAGTGGATTACCTTCCGCTTTTACAGGTTAACAGAGATATGAAGGGTATCATTGAGTCTCTCCAGAGAGATGTTGAACACATGGAGGAGAGTTCTGATACAAAGTGA 1689 0.4204 MAQQPNKQLPCDSDGVCMICNKPPLEIEILHCTTCATPWHVPCLPLLPLKIFDWICIDCSQPVDNNPFTDAPTSPIACGLGSTTHAIENDTSLTGEVARKHHKLIGGSSKPPIENNNNCNEVFDVFNSRLNCTFCQHLPERPITTPCGHNFCLKCFKKWIKQGKHNCSNCRAEIPAKMVSDPQINVQLATTIQIARSESVAHRKIFVTIPKDHFGPIVAENDPTRKRGVLVGDTWESLMECMQWGAHFPHDARIAGQSTHGAQSVALSGGYIDDIDHGNWFLYSGRDLSGSKHTHKNQSFDKKIERKNEALRLSCQKGYPVRVVRFHMKKRSSYAPKAGVRYDGVYRIEKCWRKIGKQGHKICRYLFVRCDNEPAPWKSDLSGDRPCPLPIIEELNGAVDITERKGDPSWDFDEEKDCWLWKKPPPLSKKPVNIVDPIDETNIKVDMTKEKRVSLKIKNKLLKELACNICRKVLASPLTTPCAHNFCKACLEGVFSSQSHIRERASQSGFSLRTKKNIMKCPTCSDDLVDYLPLLQVNRDMKGIIESLQRDVEHMEESSDTK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00686 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Vifa3g00686 562 ProSiteProfiles Zinc finger RING-type profile. 132 171 IPR001841 -
Vifa3g00686 562 SMART PHD_3 16 60 IPR001965 -
Vifa3g00686 562 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 200 557 IPR045134 -
Vifa3g00686 562 Pfam RING-type zinc-finger 467 502 IPR027370 -
Vifa3g00686 562 ProSitePatterns Zinc finger PHD-type signature. 17 59 IPR019786 -
Vifa3g00686 562 Gene3D - 199 385 IPR036987 -
Vifa3g00686 562 SUPERFAMILY PUA domain-like 202 386 IPR015947 -
Vifa3g00686 562 ProSiteProfiles YDG domain profile. 224 369 IPR003105 -
Vifa3g00686 562 ProSitePatterns Zinc finger RING-type signature. 482 491 IPR017907 -
Vifa3g00686 562 SUPERFAMILY RING/U-box 124 195 - -
Vifa3g00686 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 554 IPR013083 -
Vifa3g00686 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 198 IPR013083 -
Vifa3g00686 562 Pfam SAD/SRA domain 227 372 IPR003105 -
Vifa3g00686 562 Coils Coil 538 558 - -
Vifa3g00686 562 SMART ring_2 467 524 IPR001841 -
Vifa3g00686 562 SMART ring_2 132 170 IPR001841 -
Vifa3g00686 562 SMART G9a_1 219 373 IPR003105 -
Vifa3g00686 562 ProSiteProfiles Zinc finger RING-type profile. 467 525 IPR001841 -
Vifa3g00686 562 SUPERFAMILY FYVE/PHD zinc finger 7 62 IPR011011 -
Vifa3g00686 562 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 195 387 - -
Vifa3g00686 562 Pfam Zinc finger, C3HC4 type (RING finger) 130 175 - -
Vifa3g00686 562 SUPERFAMILY RING/U-box 458 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00686 Vifa-Chr3 135961812 135965229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00686 8 558 C2H2 Transcription Factor Family AT5G39550 50.417 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00686 K10638 - gmx:100781044 696.041