Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00684 ATGTTGTGTTGTGGAGGCGCTGAAGAGGATTTTAACGGTTTAGCTGCAAACCATTATAGTGCAGCAGCTATCGGGGCTAACGCGTACGGTGGTGGTGGTGGTGGAGCAGGTGGTGATAGAGGAGAGCCAAGGAGCAATATTGTGAAAAGTGGTGGTCCCCAGAAAGCATTAGAAATTGAGATACCTGAATTTAAGTTGAACGAGTTAAAGCGGTTAACAGAGAACTTTGGAACAAAAGCACTTATTGGAGAAGGTTCCTATGGGAGGGTTTTTCGTGCAAAGTTGAGCGACGGTGTTGAGGCTGCAATTAAGAAGCTCGATACTAGTTCTTCACCAGAAGTTGACTCCGATTTTGAATCGCAGTTAGCAATTGTTTCAAGATTGAAGAATGAACATTTTGTCGCGTTGATGGGATATTGTCTCGAGGCAAATAACAGAATTTTGGTTTATGAATATGCAAGTCTTGGTTCGTTGCATGACACATTACACGGAAGGAAAGGGGTTCAAGGGGCAGAACCTGGACCGGTTTTAAATTGGAATGAGAGAGTAAAAATTGCGTTTGGTGCAGCAAAAGGACTTGAGTTTCTTCATGAGAAAGTTCAACCTTCTATAGTTCATAGAGATGTAAGATCCAGCAATGTCTTGTTGTTCAATGATTATGAGGCTAAGGTTGCAGATTTCAACTTGACAAATCAGTCTTCCGACACTGCAGCACGACTACATTCAACAAGAGTCTTGGGAACATTCGGCTATCATGCTCCAGAGTATGCCATGACAGGACAAATAACCCAAAAAAGCGATGTATACAGTTTCGGCGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTGGATCATACAATGCCAAAAGGCCAACAAAGTCTTGTAACTTGGGCAACTCCAAGACTAAGTGAAGATAAAGTGAAACAATGTGTTGATCCTAAACTAAACAACGAGTATCCACCAAAAGCAATCGCTAAGTTGGCAGCAGTTGCAGCACTTTGTGTTCAGTATGAAGCAGATTTCAGGCCAAACATGACAATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATTCGAAACCCGCTGGACCTAGCTCTAATGCTTGA 1110 0.427 MLCCGGAEEDFNGLAANHYSAAAIGANAYGGGGGGAGGDRGEPRSNIVKSGGPQKALEIEIPEFKLNELKRLTENFGTKALIGEGSYGRVFRAKLSDGVEAAIKKLDTSSSPEVDSDFESQLAIVSRLKNEHFVALMGYCLEANNRILVYEYASLGSLHDTLHGRKGVQGAEPGPVLNWNERVKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKVADFNLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPSSNA 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00684 369 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Vifa3g00684 369 FunFam PTI1-like tyrosine-protein kinase 3 154 363 - -
Vifa3g00684 369 Gene3D Transferase(Phosphotransferase) domain 1 154 364 - -
Vifa3g00684 369 ProSitePatterns Tyrosine protein kinases specific active-site signature. 204 216 IPR008266 GO:0004672|GO:0006468
Vifa3g00684 369 SMART tyrkin_6 76 354 IPR020635 GO:0004713|GO:0006468
Vifa3g00684 369 SUPERFAMILY Protein kinase-like (PK-like) 57 354 IPR011009 -
Vifa3g00684 369 FunFam Pti1 kinase-like protein 52 152 - -
Vifa3g00684 369 Pfam Protein tyrosine and serine/threonine kinase 80 354 IPR001245 GO:0004672|GO:0006468
Vifa3g00684 369 Gene3D Phosphorylase Kinase; domain 1 49 152 - -
Vifa3g00684 369 ProSiteProfiles Protein kinase domain profile. 76 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00684 369 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00684 Vifa-Chr3 134651075 134653268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00684 40 368 Receptor kinase-like Gene Family AT3G58690 43.787 8.07e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vifa3g00684 PK_Tyr_Ser-Thr 6.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00684 - - gmx:100777194 595.119