Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00674 ATGGAACTTGCTTTAAGCTTAGGTGATACTCCAAAATTACCTTTTTCTTTTCTTGACAAATCCACCAATGATCCATCACCACCAAGTTTCTTCTTGAGAACTTCTGAGGAAAAAACAAGTTCCTCAGATCCACCTATTCAACTAGACCTTCTTCCTTTCACTCCTGTTCTTAGATCTCACCACCCTTCTTCTCATCTTCCCGTTCCATGGCTCACCCAACCATGTGCACCGGTGAGGGAGCTAGATGTGAACCGTTTTCCGGCGACGACGGAAGATGTCGACGACGGCGCGTCACTGTCATCACCCAGCAGTTCTGTCTCCCCGTTTCCGATGGACTTCAGTATGAGAAACACCAATGCTGAATATGGAGGAAGAAACAAGAGAGAAAACGAAGGTGAAGCTGAAAGAGTCAGTGACGACGACGAAAACGGGTCAACTCGGAAGAAACTCAGACTCTCTAAAGACCAGTCAGCTTTTCTAGAAGAAAGCTTCAAAGAACACACAACCTTAAATCCAAAACAAAAACTTGCACTAGCAAAACAGTTGAATCTCAGTCCTCGTCAAGTGGAAGTTTGGTTTCAAAACCGAAGAGCAAGGACGAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGTTGTGAGACATTAACAGAAGAGAATAGAAGGTTACAAAAGGAGCTTCAAGAGCTTAGAGCATTGAAAACTACTCAACCATTCTACATGCAACTTCCAGCTACCACACTCACTATGTGTCCTTCTTGTGAACGTGTGGCTACAAATCCTTGCAACAATCAAACCAACAAGACAAGGGGATTGCCTTTCTCTAATGGTCAGGCTCAACCACAGGCCCAGGCCCATGCCCAACTTCAAGCCCATCAGATTCCTTCATGA 900 0.4444 MELALSLGDTPKLPFSFLDKSTNDPSPPSFFLRTSEEKTSSSDPPIQLDLLPFTPVLRSHHPSSHLPVPWLTQPCAPVRELDVNRFPATTEDVDDGASLSSPSSSVSPFPMDFSMRNTNAEYGGRNKRENEGEAERVSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTQPFYMQLPATTLTMCPSCERVATNPCNNQTNKTRGLPFSNGQAQPQAQAHAQLQAHQIPS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00674 299 SUPERFAMILY Homeodomain-like 140 204 IPR009057 -
Vifa3g00674 299 FunFam Homeobox-leucine zipper protein 18 133 208 - -
Vifa3g00674 299 Pfam Homeodomain 147 201 IPR001356 GO:0003677
Vifa3g00674 299 SMART HOX_1 145 207 IPR001356 GO:0003677
Vifa3g00674 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 40 274 - -
Vifa3g00674 299 MobiDBLite consensus disorder prediction 16 46 - -
Vifa3g00674 299 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
Vifa3g00674 299 MobiDBLite consensus disorder prediction 1 46 - -
Vifa3g00674 299 Pfam Homeobox associated leucine zipper 203 237 IPR003106 GO:0006355|GO:0043565
Vifa3g00674 299 SMART halz 203 246 IPR003106 GO:0006355|GO:0043565
Vifa3g00674 299 MobiDBLite consensus disorder prediction 268 299 - -
Vifa3g00674 299 Gene3D - 151 201 - -
Vifa3g00674 299 MobiDBLite consensus disorder prediction 90 150 - -
Vifa3g00674 299 Coils Coil 209 239 - -
Vifa3g00674 299 MobiDBLite consensus disorder prediction 122 150 - -
Vifa3g00674 299 CDD bZIP 196 235 - -
Vifa3g00674 299 MobiDBLite consensus disorder prediction 94 114 - -
Vifa3g00674 299 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677
Vifa3g00674 299 CDD homeodomain 147 204 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00674 Vifa-Chr3 129383318 129384489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00674 45 273 Homeobox Transcription Factor Family AT5G47370 53.306 4.91e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa3g00674 Homeodomain 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00674 K09338 - gmx:100776113 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00674 3 129383318 129384489 Vifa3g00674 3 129383318 129384489 ECH