Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00669 ATGGCTTTCAAGCACTTCTCCGATCTACTTTCCATTATCTCGTTCTTTGTATCATTGTATGTAGTAAATGGTTCTCCACCAGAAATCATTTGCAACTCTCTTGTAAACCCTAATTATTGTAAAACTGTAATAGGTAATCAAAATGGAAATATCTATGACTACGGTCGCATTTCTATCCAAAAATCATTATCTCAATCGCGTAAGTTCATCAACTTATTGGACTCGTATCTTCAAGGTAGCTCGTCTTTGTCTCAATCCACAATTGGCGCTCTCGAAGATTGTCGATTCCTTGCAAGCCTAAGTTTTGAATACTTATCAAACACCTATGCCACAACAAATACATATAGTAATGTTCTTCCAACTTCTCGAGCAGAAGATTTTGAGACGTTCCTTAGTGCCGTTTTGACTAACCAACAAACATGTTTGGATGGTATAAACACTATAGCTTCTTCTAATCAAAGAGCGAAGAACGACTTATCTTTATCACTCTCTGATGAGATAAAGCTTCATAGTGTAACCCTAGCCTTATTCTTGAAAGGTTGGATGCCTGAGAAAAAAATAAGAACATCATGGCCACAAAACGGTAAACATTTAAACTTCAAAAATGGTCGTTTACCATTGAAGATGTCAAATAAAGCACGCGCTATTTATGATTCAGCTAGACGCCATGGGCGGAAACTTCTTCAAACTGATGAAGACAGTATTGTCGTAAGTGATATTGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTTAGCACTATCAATGAAGCAATAGCTGCTGCACCGAATAACACAGTTGCTAGTGATGGATATTTTCTCATATTTATCACTGAAGGTGTGTATCAAGAGTATGTATCTATTGACAAAAAGAAAAAGTACTTGATGATGATTGGAGAAGGAATTAATCAAACAGTTATCACAGGCAATCACAATGTTGATGATGGTTTCACAACATTCAATTCAGCCACATTTGCTGTGGTAGGTCAAGGGTTTGTGGCAGTTAACGTAACGTTTCGCAACACTGCTGGACCTGGAAAACATCAAGCAGTTGCAATGAGAAGTGGAGCAGACATGTCCACATTCTACAGTTGCAGCTTTGAAGGGTATCAAGACACACTATACACACATTCTTTGAGGCAATTCTATAGAGAATGCGATATCTATGGAACAGTTGATTTCATATTTGGAAATGCTGCAGTTGTTTTACAAAACTGCAACATCTATCCTCGTCTTCCTCTTAATGGACAATTCAATACCATTACAGCGCAAGGTCGAACCGATCCAAATCAAAACACAGGAACTTCTATACAGAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCAAATATTGGAACAGTTCAAACATATTTAGGGAGACCATGGAAGAATTATTCAAGGACGGTAGTTATGCAATCATTCATGGATAGTTTCATAAATCCTTCTGGTTGGCATATATGGGATGGTGAATTTGCATTGAGTACGTTGTATTATGCAGAATATGATAATAGAGGAGGTGGTTCAAGCACTGCAAATAGAGTGACATGGTCAGGTTATCATGTTATTAGTGCTACTGATGTAGTAAATTTCACAGTCTCTAATTTTGTCAGTGATGATTGGATTCCACAAACAGGTGTTCCATACTTGAGTGGGTTGATATAG 1662 0.3755 MAFKHFSDLLSIISFFVSLYVVNGSPPEIICNSLVNPNYCKTVIGNQNGNIYDYGRISIQKSLSQSRKFINLLDSYLQGSSSLSQSTIGALEDCRFLASLSFEYLSNTYATTNTYSNVLPTSRAEDFETFLSAVLTNQQTCLDGINTIASSNQRAKNDLSLSLSDEIKLHSVTLALFLKGWMPEKKIRTSWPQNGKHLNFKNGRLPLKMSNKARAIYDSARRHGRKLLQTDEDSIVVSDIVVVSQDGSGNFSTINEAIAAAPNNTVASDGYFLIFITEGVYQEYVSIDKKKKYLMMIGEGINQTVITGNHNVDDGFTTFNSATFAVVGQGFVAVNVTFRNTAGPGKHQAVAMRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFNTITAQGRTDPNQNTGTSIQNATIKAADDLAPNIGTVQTYLGRPWKNYSRTVVMQSFMDSFINPSGWHIWDGEFALSTLYYAEYDNRGGGSSTANRVTWSGYHVISATDVVNFTVSNFVSDDWIPQTGVPYLSGLI 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00669 553 Gene3D - 235 552 IPR012334 -
Vifa3g00669 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 177 IPR035513 -
Vifa3g00669 553 PANTHER PECTINESTERASE 18 542 - -
Vifa3g00669 553 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Vifa3g00669 553 FunFam Pectinesterase 235 552 - -
Vifa3g00669 553 Pfam Pectinesterase 241 538 IPR000070 GO:0030599|GO:0042545
Vifa3g00669 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Vifa3g00669 553 FunFam Pectinesterase 28 179 - -
Vifa3g00669 553 Pfam Plant invertase/pectin methylesterase inhibitor 30 152 IPR006501 GO:0004857
Vifa3g00669 553 SUPERFAMILY Pectin lyase-like 236 551 IPR011050 -
Vifa3g00669 553 CDD PMEI-like_3 30 181 - -
Vifa3g00669 553 SMART PMEI_2 22 176 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00669 Vifa-Chr3 124503903 124505653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00669 9 553 Carbohydrate Esterase AT4G02330 59.147 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00669 K01051 - gmx:100786124 829.32