Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00656 ATGATGGAAGCTGGGGTTCATTTTGGCCATGAGCCTAGGAACTGGAATCCTCGAATGGCACCTTTTATATCGGGAAAACGTAAAGGTATTCATATTACAAATCTTACTAAAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTGGCTTTTGATGCAGCAAGCACAGGAAAACAATTTTTAATTGTTGAAACGAGACTTCGTGAGTTCAGGGACTTGAGAACGGAGCAAAAGACGGGGAAACTGAACTCTCTTCCAAAAAGAGATGCCACTATGTTGAAGAGACAATTATCTCATTTGGAAAGATATCTAGGCGGTATAAAATATATGACAAGATTACCTGATATTGTAATAATCCTTGATCAGCAAGAAGAATATACGGCTCTTCAAGAATGTATCACTTTGGGAATTCCAACGATTTCTTTAATTGATACAAATTCTGACCCAGATCTTGCAGATATTTCGATTCCGGCTAATGATGATGCTATAGCTTCCATCAGATTAATTCTTAACAAATTAGTTTTTGCAATTTGTGAGGGTTGTTCTAGCTATATACAAAAAATTGATTAA 567 0.3598 MMEAGVHFGHEPRNWNPRMAPFISGKRKGIHITNLTKTARFLSEACDLAFDAASTGKQFLIVETRLREFRDLRTEQKTGKLNSLPKRDATMLKRQLSHLERYLGGIKYMTRLPDIVIILDQQEEYTALQECITLGIPTISLIDTNSDPDLADISIPANDDAIASIRLILNKLVFAICEGCSSYIQKID 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00656 188 Hamap 30S ribosomal protein S2 [rpsB]. 1 180 IPR005706 GO:0003735|GO:0006412|GO:0015935
Vifa3g00656 188 FunFam 30S ribosomal protein S2 59 106 - -
Vifa3g00656 188 Pfam Ribosomal protein S2 63 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa3g00656 188 SUPERFAMILY Ribosomal protein S2 1 184 IPR023591 -
Vifa3g00656 188 Gene3D - 1 181 - -
Vifa3g00656 188 ProSitePatterns Ribosomal protein S2 signature 2. 113 137 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa3g00656 188 CDD RPS2 1 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa3g00656 188 FunFam 30S ribosomal protein S2, chloroplastic 1 187 - -
Vifa3g00656 188 NCBIfam 30S ribosomal protein S2 66 179 IPR005706 GO:0003735|GO:0006412|GO:0015935
Vifa3g00656 188 PANTHER 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR 1 186 IPR005706 GO:0003735|GO:0006412|GO:0015935
Vifa3g00656 188 PRINTS Ribosomal protein S2 signature 29 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa3g00656 188 PRINTS Ribosomal protein S2 signature 130 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa3g00656 188 PRINTS Ribosomal protein S2 signature 113 130 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa3g00656 188 PRINTS Ribosomal protein S2 signature 151 165 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00656 Vifa-Chr3 120732583 120733260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00656 1 165 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 28.402 1.11e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00656 K02967 - cpap:5878370 310.457