Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00653 ATGTACCATGAACGCCACACTTTAATCATTTATGATGATGCCTCCAAACAAGCACATGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCACGAAGCTTATCCCGGAGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATTAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCTATTACAGACGACAAAATATTCTTATCTGCCGATTTATTCAATGCTGGGATCAGACCAATAATTAATGTGGGTATTTCTGTTTCTAGAGTTAGATCGGCGGCTCAAATAAAAGCCATGAAACAAGTAGGTGGTAATTTAAAATTGGAATTGGCACAATTCGTAGAATTAGAAGCTTTTGCACAATTCTCTTCAGATCTCGATAAAGCCATGCAAAATCAATTGGCAAGAGGTCAACGATTGCACGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACAGTGGAAGAACAGATAATAACTATTTATACTGGAACGAACAGTTATCTTGATTCATTAGAAATTGAACAGGTAAGGAAATTTCTTCTTGAGTTACAGGCTTATTTAAAAACTAATAAACCTAAATTCAACGAAATCATATCTTCTACCAAGTAG 693 0.3608 MYHERHTLIIYDDASKQAHAYRQMSLLLRRPPGHEAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQLGDVSAYIPTNVISITDDKIFLSADLFNAGIRPIINVGISVSRVRSAAQIKAMKQVGGNLKLELAQFVELEAFAQFSSDLDKAMQNQLARGQRLHELLKQSQSAPLTVEEQIITIYTGTNSYLDSLEIEQVRKFLLELQAYLKTNKPKFNEIISSTK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00653 230 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 230 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa3g00653 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 121 IPR027417 -
Vifa3g00653 230 Gene3D - 123 230 IPR038376 -
Vifa3g00653 230 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 123 229 - -
Vifa3g00653 230 CDD ATP-synt_F1_alpha_C 126 230 IPR000793 GO:0015986
Vifa3g00653 230 FunFam ATP synthase subunit alpha 123 230 - -
Vifa3g00653 230 Pfam ATP synthase alpha/beta chain, C terminal domain 122 229 IPR000793 GO:0015986
Vifa3g00653 230 FunFam ATP synthase subunit alpha, mitochondrial 2 122 - -
Vifa3g00653 230 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 3 115 IPR000194 GO:0005524
Vifa3g00653 230 Gene3D - 1 122 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00653 Vifa-Chr3 120727405 120728097 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00653 5 128 Primary Pumps ATPases(2) AT4G38510 31.452 5.97e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00653 K02111 - gmx:3989298 397.512