Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00648 ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACCGTACTTCAAGTAGGCGATGGCATTGCTCGTATTTATTATCTTGATGAAGTAATGGCGGGTGAATTAGTAGAATTTGAAGAAAGTACAGTAGGCATTGCTTTGAATTTGGAATCAAAAAACGTTGGTGTTGTATTAGTGGGTGATGCTAAACCTATTGACGGTCGAGGAGAAATTTCAGCTTCGGAATCTCAGTTAATCGAATCTCCCGCTCACGGTATTATTTCCAGACAGTCCGTGTATGAGCCCCTTCAAATGGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTGATTATTGGGGACAGACAAACTAGTAAAATAGCAGTAGCTACAGATACGATTCTCAATCAACAGGGACAAAATGTAGTATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTCATAACTTCTTTACAAGAAAGAGGAACAATGGAATACACTATTATAGTTGCTGAAACAACAAATTCCCCAACTACATTACAATACCTCGCGCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTAAACGCCAGACTTTAATCATTTATGATGATCCCTCAAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACAAAGACCACCAGGTCGCGAAGCTTATCCCGGAGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAATTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTTAGCTTATATTCCTACTAATGTAATTTCTATTACAGACGGTGTGATCGGTGGAAATAGAATTGACTGTTTTTTAAGCTGGTTTCGCGAAATGTCGCGGTAA 984 0.3872 MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYYLDEVMAGELVEFEESTVGIALNLESKNVGVVLVGDAKPIDGRGEISASESQLIESPAHGIISRQSVYEPLQMGLIAIDSMIPIGRGQRELIIGDRQTSKIAVATDTILNQQGQNVVCVYVAIGQKASSVAQVITSLQERGTMEYTIIVAETTNSPTTLQYLAPYTGAALAEYFMYRKRQTLIIYDDPSKQAQAYRQMSLLLQRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVLAYIPTNVISITDGVIGGNRIDCFLSWFREMSR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00648 327 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 79 IPR004100 GO:0046034|GO:1902600
Vifa3g00648 327 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 84 IPR036121 GO:0046034|GO:1902600
Vifa3g00648 327 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 2 80 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa3g00648 327 FunFam ATP synthase subunit alpha, mitochondrial 63 319 - -
Vifa3g00648 327 CDD F1-ATPase_alpha_CD 72 310 IPR033732 GO:0032559
Vifa3g00648 327 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 117 311 IPR000194 GO:0005524
Vifa3g00648 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 311 IPR027417 -
Vifa3g00648 327 Gene3D - 93 314 IPR027417 -
Vifa3g00648 327 CDD ATP-synt_F1_alpha_N 28 83 - -
Vifa3g00648 327 Gene3D - 2 92 IPR023366 -
Vifa3g00648 327 FunFam ATP synthase subunit alpha 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00648 Vifa-Chr3 120624754 120625836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00648 72 310 Primary Pumps ATPases(2) AT4G38510 25.781 3.75e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00648 K02111 - gmx:121173224 531.561