Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00642 ATGTTTTCTTGGTTAGCAAGGCTAGTTTCTGCGTGCTTGAGACCAGTGAGACGGTATGCACGTATGAATAAAGGTGATGATGATGATTCTGACGGGGCTTCAACATCTGGTGATGCTCTTGTTTGGTGTAAGGATCTTGAGAAACACTCGTGTGGTGAATTCTCGTTTGCTGTTGTTCAGGCTAATGAGGTTATTGAAGATCATAGCCAGGTTGAAACTGGTTCTGGTGGTGTGTTTGTTGGTGTTTATGATGGACATGGTGGGCCTGAAGCTTCTCGGTTTGTTAACGATCATCTCTTTCATCATCTCATCAGGATTGCTCAGGAAAATGGTTCTATCTCCGAAGATATTATAAGTAACGCCGTTTCTGCTACGGAGGACGGATTTCTAACTCTTGTTCGCAGGAGTTTTGGAATAAAGCCACTGATAGCAGCAATGGGTTCTTGTTGTCTAGTCGGAGTTATCTGGAAAGGGACATTATATATTGCTAATCTTGGAGACTCTCGTGCTGTGATCGGTTCAACGGGTGGACATTCTAAGAAGATTGTTGCTGAACAGTTGACGAAAGAGCATAATGCCTCCAGAGAGGAAATCAGAAGAGAACTAAAGGCTTTGCATCCCGATGATTCGCAGATTGTTATTATGAAGCATGGAACGTGGCGTGTTAAAGGCATCATCCAGGTATCAAGATCTATAGGTGATGCATATTTGAAGCGGCCGGAGTTCTCCTTCGACCCTTCATTCCCACGGTTCCACTTGCCTGATCCTATCTGCGGACCGGTTCTTTCAGCAGAGCCATCTGTTTGTTCAAGAGTTTTACAACCTAACAATAAATTTGTTATATTCGCATCTGATGGCCTTTGGGAACACATGACAAATCAGGAAGCTGCCGAGATTGTTCATAAAAGCCCTAGAAATGGAAGTGCAAGAAGACTTCTTCAGGCTGCATTGACTGAGGCGGCGAGGAAAAGGGAAATGAGATATAAAGATATGCAGAAAGTTGAAAAAGGGGTTCGGCGTTTTTTCCACGACGATATCACAGTGGTTGTTATCTTCATCGACCACGAGTTGCAAAAGAAGAATGTTAATGTTCCTGAGTTGTCCGTCAAAGGGTTTATCGACACAGTTGGAACATCGAAATTTAGAAGTTTCCAAGAAATGCAATGA 1167 0.4327 MFSWLARLVSACLRPVRRYARMNKGDDDDSDGASTSGDALVWCKDLEKHSCGEFSFAVVQANEVIEDHSQVETGSGGVFVGVYDGHGGPEASRFVNDHLFHHLIRIAQENGSISEDIISNAVSATEDGFLTLVRRSFGIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSTGGHSKKIVAEQLTKEHNASREEIRRELKALHPDDSQIVIMKHGTWRVKGIIQVSRSIGDAYLKRPEFSFDPSFPRFHLPDPICGPVLSAEPSVCSRVLQPNNKFVIFASDGLWEHMTNQEAAEIVHKSPRNGSARRLLQAALTEAARKREMRYKDMQKVEKGVRRFFHDDITVVVIFIDHELQKKNVNVPELSVKGFIDTVGTSKFRSFQEMQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00642 388 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Vifa3g00642 388 ProSiteProfiles PPM-type phosphatase domain profile. 53 353 IPR001932 -
Vifa3g00642 388 SMART PP2C_4 33 351 IPR001932 -
Vifa3g00642 388 Coils Coil 184 204 - -
Vifa3g00642 388 Gene3D - 38 364 IPR036457 -
Vifa3g00642 388 CDD PP2Cc 54 353 IPR001932 -
Vifa3g00642 388 PANTHER PROTEIN PHOSPHATASE 38 351 IPR015655 GO:0004722|GO:0006470
Vifa3g00642 388 Pfam Protein phosphatase 2C 77 322 IPR001932 -
Vifa3g00642 388 FunFam Probable protein phosphatase 2C 42 44 361 - -
Vifa3g00642 388 SUPERFAMILY PP2C-like 60 354 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00642 Vifa-Chr3 119470747 119472777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00642 1 384 PP2C-type Phosphatase Gene Family AT5G06750 69.565 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00642 K01102 - gmx:100813740 650.973