Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00637 ATGAGTTCTGGTTTTGTACCTTATCCCTCTTCTCCCTCTTCACCATCACAACCTAACTCATCAACTGAGTTCATTGATGGCTTAAAGTTTGGTAAAAAAATATACTTTGAAGATGCAGCACCTCAAACCAAACCTAATGGTGGCGGTTCTTCATCTTCAACATCATCTACGGGGATGATGATGAAGAAGGGAACTCATCCACCTAGGTGTCAAGTTGAAGGTTGTAAAGTAGATCTGAGTGGTGCTAAGGCTTATTATTCTAGGCATAAAGTTTGTTGCATGCATTCAAAATCTCCTTATGTTGTTGTTTCTGGTTTGGACCAGAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTGCCTGAATTCGATCAAGGAAAACGAAGTTGTCGCAGGCGACTAGCTGGCCATAATGAAAGGCGAAGAAAGCCTCAACCGAGCTCCGTGTTTACCTCGCACTTTCCCCGACTCTCTCCACCTACTTTTGATAGCAATGTAAAATGTGATAACTTTCTGATGGAATGTGCTTCATACCAGAACAACTCAATGCTAACTCCAAGATCATCTGAGCCAGTTCGCGCCAATCCGATAACACCATTTACTTGGCAAAACAACTCATCAATGCCGTCCGAATTTTTTCAGCAAGCAACAAACTTCCACGGTGCTAGACATCTTGCAACCGAAAACTACAACGAAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGTATTCTAGAAACTCAACATCACCAAGTGTAGAGGTGAACAACAACCTGTTGAATTTCAATGGTTCATCTTCACTCATGACACAGTCTTCTCAAGGTGCAGCCAGTTTTCAACTTCCAAATGCTTCATGGTTTTTAAAGGGTGTCGATACTCGTAACTGTTTGTCGCCCGATGATGTTCCCGATGTCGGTCTCGGACAAAATTTGCAGAGTATGAATAGCAATCTTCATGGTGAGCATGATGTGCCACAAGGCAAGAGGCAATATTACTGGTCACTTTGA 1023 0.4272 MSSGFVPYPSSPSSPSQPNSSTEFIDGLKFGKKIYFEDAAPQTKPNGGGSSSSTSSTGMMMKKGTHPPRCQVEGCKVDLSGAKAYYSRHKVCCMHSKSPYVVVSGLDQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQPSSVFTSHFPRLSPPTFDSNVKCDNFLMECASYQNNSMLTPRSSEPVRANPITPFTWQNNSSMPSEFFQQATNFHGARHLATENYNEVTDSSCALSLLSNQTWYSRNSTSPSVEVNNNLLNFNGSSSLMTQSSQGAASFQLPNASWFLKGVDTRNCLSPDDVPDVGLGQNLQSMNSNLHGEHDVPQGKRQYYWSL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00637 340 Gene3D - 61 131 IPR036893 GO:0003677|GO:0005634
Vifa3g00637 340 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Vifa3g00637 340 MobiDBLite consensus disorder prediction 136 155 - -
Vifa3g00637 340 SUPERFAMILY SBT domain 68 149 IPR036893 GO:0003677|GO:0005634
Vifa3g00637 340 Pfam SBP domain 70 143 IPR004333 GO:0003677
Vifa3g00637 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 290 IPR044817 GO:0003677
Vifa3g00637 340 MobiDBLite consensus disorder prediction 44 61 - -
Vifa3g00637 340 Coils Coil 337 340 - -
Vifa3g00637 340 MobiDBLite consensus disorder prediction 1 24 - -
Vifa3g00637 340 MobiDBLite consensus disorder prediction 39 67 - -
Vifa3g00637 340 FunFam Squamosa promoter-binding-like protein 14 61 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00637 Vifa-Chr3 115656000 115657979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00637 28 245 SBP-box Gene Family AT3G57920 48.198 2.27e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa3g00637 SBP 1.1e-31 No_clan