Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00636 ATGGCGTCTAAAGGTCAAAGGTCAAAGGTTGATCATGATTATAAAGTTAAACGGCCCAAGGCTCTTGAAGCTCCAAAGGATCCTAGACGGCCCAAAACTCATTGGGACCATGTTTTAGAAGAGATGGTGTGGCTATCAAAGGACTTCGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTTCTTTAAAAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTTTGGACAAAAATAGAAAAGCTGGTTCTTTACAAGCATCAAATGGAACTCGATGAGAAGAAAAAAAAGGCACTTGACAAACAGCTCGAGTTTCTTTTAGGGCAAACTGAGAGATACTCAACTATGTTGGCCGAGAATCTTGTGGATGCTCATACACCAGCAGAGAAAATTTCTGCAGAGCATCACACGGGTGTTCAATGCAAAGATATAGATGGAGACATCATCAATGAACCTCAGGAAGCTAATTTTGAGCATCAATCCAACACACCTGATCATGATGAAGAATATGATGTACAATCTGATGATGTATCGGATGATGATGAGCAAACCCTCGAAGAAGATGAGGCTCTTATAACTAAAGAAGAAAGACAAGAGGAATTGGCAGCTTTGCAGAATGAAATTGATCTTCCAATTGAGGAATTACTCAAACGTTATGTTGGAGATAAAGGAGAATTGACAAAGCATGAAAGTAGTCCGGATCGTAGTGAAGATGGTGAAAAAACTGATGATGCTGATGGTCTTGAAGAACCAGTATTGGAAAATGGAGATCATATTTCTATAAGCAAAATAGGTACAAGCAACTCCGGCATGGTCCCTGGTCGACGTTGTGATGACAATAATGGGGATGTAGCTACACCACCAACAAACAATCTACCTCAAAATGAGGATCATCAATTTGGAAGTCGTAAAGAGGTTTCCAGTGAGGCAGCCAATGAAAATGTTCCATTTGATTTTTCTGATGAAGAGGAAGATGGTGACTTTTTGTTTGGCACAGAGGATAAGGATGATGAAACAACCTTATCCGAGGAAGAAAAACTGGACAGAGTTGATGCAATTGATCCAAAAGATGAGATTGCATTACTACAAAAAGAGAGTAACATGTCGGTTGAGGAGCTACTTGCAAGGTATAAAAAGGATCTGAGTGATGATGGGGATCAGGAAGATGAGTCTGATTATGATTCTGCTTCATCAGAAGCCCATCAGAATTTACCAGTCCATGTTGATGATGATGCTGAGCAGAAAGTTCCTGCTGTTTCTGGGGGTGAAGATATGAAGTCTGGCGAGCAACTGGCTGCCGTACAGACCCAGGCAGAAGAACAGGGGGAAGGCCCTTGTGAAAATTCAGAGGAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGTACAAAATCCCCCTTTCTACTCAAGTACACTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTAACAATGTATGAAAAAAAGCTGAATGGAATTCTGGCAGATGAAATGGGGCTTGGAAAAACGATAATGACTATAGCTTTGCTTGCACATCTTGCCTGTGAAAAGGGAATATGGGGTCCACATCTAATTGTAGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCGTTTAAAATTTTGACCTATTTTGGAAGCGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCACGTATGCATAACAACATATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTGTTGAATTTCAATTCTAAACGACGGATTCTGTTGACTGGTACACCGCTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCGCACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCCTTCTTACTCCGTCGATTAAAGAGAGATGTAGAAAAGCAACTTCCCATGAAAGTTGAGCATGTCATATACTGTAGGCTGTCAAAGAGGCAGAGGAATTTGTACGAGGATTTCATTGCTAGCTCAGAGACTCAAGCTACTCTTGCAAATGCCAATTTTTTTGGGATGATCAGTATTATCATGCAACTTCGTAAGGTTTGTAATCATCCTGACCTATTTGAGGGTCGTCCAATCGTCAGTTCTTTTGATATGCGTGGGATTGATTTTCAATTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAGCTCCTTTTCAACAGTTGACTTGGAAGGTTTGGGTCTCTTATTTACTCATCTTGACTATAGCATGACTTCTTGGGAGAGTGATGAAGTGCAATCTATTGAGACCCCTGCAACTTTAATTAGGGAACGCACTGATATGGCTGATCTGGAGGTAATTAAGCCTGGACTGAAGTGTCAGAAAAAGCAGCAAGGAACAAACATTTTCGAAGAGATTCGAAAAGCAATTTGGGAAGAGAGAATATCACAGGCAAAGGAACGTGCGGCAGCTGTTGCATGGTGGAACTCCTTGAGGTGTAAAAAACGACCCATCTACTCAACAACTCTAAGGGACCTTGTTACCATAAGGCATCCTGTATACGATATTTATCGAAAGAAGGCAAACCCTGTTTCATACTTGTTCCCATCAAAACTGGCTGACATTGTTCTCTCCCCAGTTGAACGATTTCAAAGGACGATTGATGTGGTTGAAAGTTTCATGTTTGCCATTCCTGCCGCCCGAGCTTCCCCTCCTGTTTGCTGGTGCAGTAAAAGGGAGACAACTGTGTTTCTGAACCCATCTTACAAGCAGCAATGCTCTGATATTCTGTCACCACTATTGTCACCAATCAGGCCTGCAATCGTCCGTCGTCAAGTATATTTCCCAGATAGGCGACTTATACAATTTGACTGTGGAAAACTACAGGAGCTAGCAATTTTGCTGAGGAGATTAAAATCAGAAGGTCACCGAGCTCTGATATTTACTCAGATGACTAAGATGCTTGACATATTAGAAGCATTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACCCAGCCAGAGGAAAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATTTTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGCCAGACACGTGAAGTGCATATATATCGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGCGCACTTGATGATTTAGTCATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAAAAGCTTGATCCGATGGAACTATTTTCAGGTCATAGAACACTTCCAATTAAAGACATGCCGAAGGAGAAAAACCAAAACAGGGGAGAAAGTTCTGTTACTAATGCAGATGTGGAAGCTGCATTAAAACATGTAGAAGATGAGGCAGATTATATGGCACTAAAGAAAGTTGAACTGGAAGAAGCTGTGGATAATCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTGAAGAGGATGAATATGCAAATGAGGATGATGAGCCTCAAGAATTAGGCGAATCTGTTTCCAATTTGAATGAAGAGGATGCATTAATGTTAAATGGAGGTGATCCTAAGGAAGATAAACCACCTTCTGTTGTTGCCAAAGAAGATGATGTTGACATGCTAGCAGATGTGAACCAGATGGCAGAAGCTGCAGCTGCAGCTGGGCAGGCGTTATCAGCATTTGAGAGTGAGCTACGCCCTATTGACCGATATGCCATTCGTTTTCTAGAGCTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGATACTGAATGGGAGTTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCCGAAATTGACGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCAGATTTTGCAACAAAGGCTTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAAGAACTTGAATATGAAGCTAAACTGAAAGAGGAAGCTGAAGAAGAGAAAAACAGGACTCAAACACCAAAAGATTCGAAGCTCAAGCCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAGTCTCTGAAGAAAGGATCTTTAACCTCTAGCTTAAGAACTGTGAAAGATGAGCTACGAGCAGTGCCAATGGCCATAGATGATGATGCTGCCACTAGTCTTGATTTTGTGACTCCAAGTTCAAGTAGACATAAAAAACGCAAGTCTAAATTAACAACTGATGGTGAAGAAGAAAAGCGATTTAAGAAGTCCAAAAAGTACAAGAGGAATCCTATTGAAATTTATGATTCAGATTTAGAATCCAATTCAATTGATATGCAGGACGAACATGCAGAATCAGATCCATGTAAAAGTCTGGTTGTGTTGGAACAGAAAACAGTTGGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCAGTGCCTGTGAAACGGGTCTTTATCATAAAATCCGAAAAATTGAAGAAGGGAAATATTTGGTACAAAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCAGTTGTTCATGAATATGGTCCTAACTGGAGCTTTGTTAGTGAAATGCTTTATGGAATGACTGCTGGTGGGGCATATAGGGGGAGATATCGGCATCCCGTCCATTGCTGTGAAAGGTTCAGAGAATTGTTCCAAAAATATGTCTTGTTTTCCTTGGACAATGCAAATCATGAGAAAATCAACAACACATGCTCTGGAAAGGCTCTTAAAGTAACAGAGGATAACATTCAAATGTTGTTAGATGTTGCCTCTGAACAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTTTGCATTGCTTTCTTCTGCCCGGAAGGTGGCGTCACATGTTGACCGCAGAAAAAATCTGCATGCCACTAGCAATGGTCTCTATTTTGACCAGACTTTCTTCACTTCAATTGGCCAGCATTCACAATATCCCCTGAACAAACCCTCCGAAAGGACGACGCTTGCTTATTCGGCCCAGAGCAAGAAATTACTGGCAGCTGCACTGGAAGACATGAGTAGGCCAGAGAATGACAAAACATTCCTCTCTAACCAGGGTGAAGGCATGCTGGTGAGTGCAGATCAGGTGGATATTACCCTGGAGTTCCCGAAAGAGGAAAGTGATTCCTCATCCTCATTTCCATCTGTTATAAAGTTATCAATAAAAGGGGATGAAGCACCACCATCTTTAAATAAGCACACAAGAGATGCTCATCTTAAAAGTTGTTTTTCTGCTGCTGAGAATCGTTTCAGGGAGGTAACAAGAGCTTGTGAAGAAGACAGATCTGGATGGGCTTCATCCACATTCCCAACAAATGATGCAAAGTCTCGACCTGGATCCAGAATACAATCTTCTGGAAAGCAAAGGTCTTCTTCCATGTCCGATGTTACTAAGCCGTCTAGGGGAAAGACCAAAAGAGCTTCAGTGGATTCTAGTGAAATGCATCGCCGTCAAGCTGAACCATTATGCCCGCCAATGCCGCTGCTTCCTGAACTGGCATTGGATCTCCCTTCATCTTCTATGAATGAGTTTGGGTTTAATACGGATAGAAATCTCCCCTTTGATTTGAATGAAGAAAGTTCATTGGAAAGGGAAAATTGTGGAGTCATCCCACATGATTATATAGCTGAGTTAATCTCGGGCCTTGATGATTGTACAACATTCCCTGAATATACTGATATTAGATAA 6141 0.4123 MASKGQRSKVDHDYKVKRPKALEAPKDPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVSLKASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHTPAEKISAEHHTGVQCKDIDGDIINEPQEANFEHQSNTPDHDEEYDVQSDDVSDDDEQTLEEDEALITKEERQEELAALQNEIDLPIEELLKRYVGDKGELTKHESSPDRSEDGEKTDDADGLEEPVLENGDHISISKIGTSNSGMVPGRRCDDNNGDVATPPTNNLPQNEDHQFGSRKEVSSEAANENVPFDFSDEEEDGDFLFGTEDKDDETTLSEEEKLDRVDAIDPKDEIALLQKESNMSVEELLARYKKDLSDDGDQEDESDYDSASSEAHQNLPVHVDDDAEQKVPAVSGGEDMKSGEQLAAVQTQAEEQGEGPCENSEERESEDIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYTLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKVEHVIYCRLSKRQRNLYEDFIASSETQATLANANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMRGIDFQLSSSICSMLLPSSFSTVDLEGLGLLFTHLDYSMTSWESDEVQSIETPATLIRERTDMADLEVIKPGLKCQKKQQGTNIFEEIRKAIWEERISQAKERAAAVAWWNSLRCKKRPIYSTTLRDLVTIRHPVYDIYRKKANPVSYLFPSKLADIVLSPVERFQRTIDVVESFMFAIPAARASPPVCWCSKRETTVFLNPSYKQQCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPIKDMPKEKNQNRGESSVTNADVEAALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDEYANEDDEPQELGESVSNLNEEDALMLNGGDPKEDKPPSVVAKEDDVDMLADVNQMAEAAAAAGQALSAFESELRPIDRYAIRFLELWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATKAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKNRTQTPKDSKLKPKKKPKKAKFKSLKKGSLTSSLRTVKDELRAVPMAIDDDAATSLDFVTPSSSRHKKRKSKLTTDGEEEKRFKKSKKYKRNPIEIYDSDLESNSIDMQDEHAESDPCKSLVVLEQKTVGRSKMGGKISITPVPVKRVFIIKSEKLKKGNIWYKDCIPSADFWLPQEDAILCAVVHEYGPNWSFVSEMLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLFSLDNANHEKINNTCSGKALKVTEDNIQMLLDVASEQANRELLLQKHFFALLSSARKVASHVDRRKNLHATSNGLYFDQTFFTSIGQHSQYPLNKPSERTTLAYSAQSKKLLAAALEDMSRPENDKTFLSNQGEGMLVSADQVDITLEFPKEESDSSSSFPSVIKLSIKGDEAPPSLNKHTRDAHLKSCFSAAENRFREVTRACEEDRSGWASSTFPTNDAKSRPGSRIQSSGKQRSSSMSDVTKPSRGKTKRASVDSSEMHRRQAEPLCPPMPLLPELALDLPSSSMNEFGFNTDRNLPFDLNEESSLERENCGVIPHDYIAELISGLDDCTTFPEYTDIR 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00636 2046 SMART helicmild6 1091 1174 IPR001650 -
Vifa3g00636 2046 Gene3D - 1643 1703 - -
Vifa3g00636 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 1244 IPR027417 -
Vifa3g00636 2046 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1281 1311 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 407 482 - -
Vifa3g00636 2046 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 532 697 IPR014001 -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1950 1968 - -
Vifa3g00636 2046 Coils Coil 215 235 - -
Vifa3g00636 2046 Gene3D - 766 845 - -
Vifa3g00636 2046 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 766 831 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1912 1977 - -
Vifa3g00636 2046 SMART ultradead3 516 709 IPR014001 -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 197 217 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 344 369 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1467 1500 - -
Vifa3g00636 2046 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1032 1281 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1915 1949 - -
Vifa3g00636 2046 Gene3D - 489 765 IPR038718 -
Vifa3g00636 2046 SUPERFAMILY Homeodomain-like 1644 1701 IPR009057 -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1233 1254 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1544 1558 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 311 325 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1296 1310 - -
Vifa3g00636 2046 CDD DEXQc_SRCAP 520 742 - -
Vifa3g00636 2046 CDD SF2_C_SNF 1050 1185 - -
Vifa3g00636 2046 Gene3D - 1034 1280 IPR027417 -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 185 226 - -
Vifa3g00636 2046 Coils Coil 1401 1421 - -
Vifa3g00636 2046 FunFam Photoperiod independent early flowering protein 1642 1703 - -
Vifa3g00636 2046 FunFam Photoperiod-independent early flowering 1 490 765 - -
Vifa3g00636 2046 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1215 IPR001650 -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1531 1558 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 248 281 - -
Vifa3g00636 2046 Pfam HSA domain 28 93 IPR014012 -
Vifa3g00636 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 742 IPR027417 -
Vifa3g00636 2046 PANTHER HELICASE SRCAP-RELATED 11 1943 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1467 1483 - -
Vifa3g00636 2046 Pfam Helicase conserved C-terminal domain 1066 1174 IPR001650 -
Vifa3g00636 2046 Pfam SNF2-related domain 537 809 IPR000330 GO:0005524|GO:0140658
Vifa3g00636 2046 SMART bromneu2 23 94 IPR014012 -
Vifa3g00636 2046 Coils Coil 1452 1476 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 248 383 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1484 1498 - -
Vifa3g00636 2046 MobiDBLite consensus disorder prediction 1281 1295 - -
Vifa3g00636 2046 ProSiteProfiles Myb-like domain profile. 1646 1699 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00636 Vifa-Chr3 115147416 115164757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00636 540 812 RAD5 or RAD16-like Gene Family AT5G43530 30.124 2.41e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa3g00636 SNF2_N 2.1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00636 K11661 - gmx:100794898 3037.28