Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00628 ATGGATAACCGAAAGCGAGGGAGGTTCGATGCCGCCGTTAACGGCTCCGCTAAGAAGACCAAACAAGAAATGGATTCATTATCAAGTGGTGTAGGAAGCAAAACGAAGCCTTGTACCAAGTTTTTCAGCATTGCTGGCTGCCCATTTGGTGAAGGCTGTCACTTCTTGCATTTTGTTCCTGGTGGTTATAATGCTGTTGCCCAGATGATGAATCTGAAACCTGCTGCACCCCCTAGAAACGTTGCTGCCCCACCACCAGTCTCCAACAATGGCTCTGCACCAAATGCTGCTAAAACCCGCATATGTAACAGGTTTAATTCTGCGGAGGGCTGCAAGTTTGGTGACAAGTGCCACTTTGCCCATGGTGAATGGGAACTTAGCAAACCTTTTGTTCCGTCAATTGATGATCACCGTCCTATGGCACCGACAACAGTTAATCGTATGGCTGGTCGAACTGAGGCTCCTTCTGGTCTGGGCGCTACCAGCTTTGGTGCCAATTCCACTGCCAAGATCAGTGTAGAAGCTTCCTTGGCTGGAGCCATCATTGGAAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGTCAAATTTTCAATTCGTGACCATGAATCTGACCCAAATCTTAGAAACATTGAACTCGAGGGAACATTTGATCAAATTGCACAGGCAAGTAACATGGTAAAAGATTTACTTTTGACTCTATCAGTCTCTGCCCCACCGAAATCCACCCCAGGTGGTGGTCCAGGCGCCCCAGCCCCACCTGGAAGAAACATCAAGACCAAGCTTTGTGAGAATTTTGCTAAAGGATCTTGCACATTCGGTGAAAGATGTCACTTTGCTCACGGAGCTGCCGAATTGCGAAAGACAGGAATCTAA 885 0.4791 MDNRKRGRFDAAVNGSAKKTKQEMDSLSSGVGSKTKPCTKFFSIAGCPFGEGCHFLHFVPGGYNAVAQMMNLKPAAPPRNVAAPPPVSNNGSAPNAAKTRICNRFNSAEGCKFGDKCHFAHGEWELSKPFVPSIDDHRPMAPTTVNRMAGRTEAPSGLGATSFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGVKFSIRDHESDPNLRNIELEGTFDQIAQASNMVKDLLLTLSVSAPPKSTPGGGPGAPAPPGRNIKTKLCENFAKGSCTFGERCHFAHGAAELRKTGI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00628 294 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Vifa3g00628 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 285 IPR000571 GO:0046872
Vifa3g00628 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 123 IPR000571 GO:0046872
Vifa3g00628 294 SUPERFAMILY CCCH zinc finger 33 57 IPR036855 GO:0046872
Vifa3g00628 294 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 162 236 IPR036612 GO:0003723
Vifa3g00628 294 Coils Coil 286 294 - -
Vifa3g00628 294 ProSiteProfiles Zinc finger C3H1-type profile. 32 60 IPR000571 GO:0046872
Vifa3g00628 294 CDD KH-I_AtC3H36_like 169 234 - -
Vifa3g00628 294 FunFam Zinc finger CCCH domain-containing protein 91 128 - -
Vifa3g00628 294 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Vifa3g00628 294 Pfam KH domain 169 231 IPR004088 GO:0003723
Vifa3g00628 294 MobiDBLite consensus disorder prediction 19 33 - -
Vifa3g00628 294 SMART kh_6 165 235 IPR004087 GO:0003676
Vifa3g00628 294 PANTHER CCCH ZINC FINGER/TIS11-RELATED 16 145 IPR045877 GO:0003729
Vifa3g00628 294 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g00628 294 Pfam RNA-binding, Nab2-type zinc finger 37 57 - -
Vifa3g00628 294 ProSiteProfiles Type-1 KH domain profile. 166 230 - -
Vifa3g00628 294 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Vifa3g00628 294 SMART c3hfinal6 32 59 IPR000571 GO:0046872
Vifa3g00628 294 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Vifa3g00628 294 SUPERFAMILY CCCH zinc finger 96 127 IPR036855 GO:0046872
Vifa3g00628 294 Gene3D - 260 292 - -
Vifa3g00628 294 Gene3D - 91 128 - -
Vifa3g00628 294 SUPERFAMILY CCCH zinc finger 260 290 IPR036855 GO:0046872
Vifa3g00628 294 Gene3D K Homology domain, type 1 162 259 IPR036612 GO:0003723
Vifa3g00628 294 FunFam Zinc finger CCCH domain-containing protein 255 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00628 Vifa-Chr3 114159499 114163467 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa3g00628 KH_1 2.3e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00628 - - gmx:100817463 469.929