Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00627 ATGGGTTTTTCTTTGGCTTTTGAAGAAACAGAACAAGATACAAGGTTTTTAGGTTCCAACAATAACAAAAATTCTATGATCATGGCTTCTTCTAATGTTGTTAAGAGCACAACAAATTCATCAACAACTCATCTTGAATCAATCTCTCAACAACAACAAAACCATCATCATCATCTTCATCTTCATCATCATCAGCATCAACAGCAGCATCAACAGCAGCATCATCAGCAACAACATCATCATCAGCAGCATCAGCAACAACATCAGCATATGAATGATGATAATCAAATTTCTTTTGGAATGATGCCATCTTCATCTTCATCCTCTATTCCTAACAACTACTTAAGCAAAGATTCAAGTGCTTTTGATTTAGGTGAATTGGATCAAGCTTTTTTCTTGTATCTGGATGGACAATCACAACAATCACAAGCTGATCCTTCTACTCTTCAAGATCAAAGACAAAATTCATCATCAGGAATGCGGCCACCACCAACTCTTAACATTTTCCCATCTCAACCAATGCATGTATCACCACCACCACCACCCTCTAATTCAAAGGCTAGTATGGGATTAACTTCTCCACAAACAAGTGGTTCCAAAAAAATATCTCAACCGTCCATGGAGTTGGCAAACCAACGAAACGAAACCCTTTCTGCACCTGCACCACCAAAACCTGTCAAGAGAGAGAATAATCGCAAGGGTACAACTTCAAGTTCTGAACATGAAGGACCAAAAACGCCCGATCCTAAGACTCTGAGAAGACTTGCTCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTTAGGAAAAAGGCTTATGTTCAGCAGCTAGAATCAAGTAGAATTAAGCTTAATCAGCTTGAACAAGAATTACAGCGTGCTAGAGCTCAAGGCGTTTTAATGGGGGGAGGTGCAATTTTGGGAGGAGATCAAGGCATGCCAATTTCTATGAACAACATTAGCTCAGAAGCTGCAATGTTTGATGTGGAATATGGGAGATGGTTAGAGGAGCACCTAAGGCTTGTATGTGAGCTAAGAGCAGCAGTAGATGAACACTTGCATGAAAATGAGCTTAGGTTATATGTGGAAAATAGTTTGGCTCACTATGATCAAGTACTTAACCTCAAAAACATTCTAGCTAGAACAGATGTTTTTCATCTTGTTTTCGGAATGTGGAAAACACCGGCCGAGCGTTGCTTCATGTGGATCGGCGGATTCAGACCATCTGAACTCATTAAGATAATTGCAAGTCAAATTGAGCCTCTTACGGAGCATCAAATACTAGGAATATGTGGGTTGCAACAATCAACACAAGAAGCAGAAGAAGCTCTTTCTCAAGGGCTTGATGCACTCAACCAATCTCTTTCTGAGACCATAACATCAGACTCTTTGAGCCAACCGCCTAACATGGCTAACTACATGGGACAAATGGCTGTTGCCATGAACAAGCTTTCAACTCTTGAAAGTTTTGTGAGACAGGCAGATAATCTGAGGCACCAAACAATTCATCGTCTTCATCAATTGTTAACAATTCGTCAAACTGCAAGGTGTTTGATTGCAATGTCGGAATATTTTCACCGTCTTCGAGCATTGAGTACTCTCTGGTTGACCCGCCCTCGTCAAGAATAA 1626 0.4059 MGFSLAFEETEQDTRFLGSNNNKNSMIMASSNVVKSTTNSSTTHLESISQQQQNHHHHLHLHHHQHQQQHQQQHHQQQHHHQQHQQQHQHMNDDNQISFGMMPSSSSSSIPNNYLSKDSSAFDLGELDQAFFLYLDGQSQQSQADPSTLQDQRQNSSSGMRPPPTLNIFPSQPMHVSPPPPPSNSKASMGLTSPQTSGSKKISQPSMELANQRNETLSAPAPPKPVKRENNRKGTTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARAQGVLMGGGAILGGDQGMPISMNNISSEAAMFDVEYGRWLEEHLRLVCELRAAVDEHLHENELRLYVENSLAHYDQVLNLKNILARTDVFHLVFGMWKTPAERCFMWIGGFRPSELIKIIASQIEPLTEHQILGICGLQQSTQEAEEALSQGLDALNQSLSETITSDSLSQPPNMANYMGQMAVAMNKLSTLESFVRQADNLRHQTIHRLHQLLTIRQTARCLIAMSEYFHRLRALSTLWLTRPRQE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00627 541 MobiDBLite consensus disorder prediction 138 253 - -
Vifa3g00627 541 MobiDBLite consensus disorder prediction 13 54 - -
Vifa3g00627 541 MobiDBLite consensus disorder prediction 166 185 - -
Vifa3g00627 541 MobiDBLite consensus disorder prediction 55 85 - -
Vifa3g00627 541 Coils Coil 269 296 - -
Vifa3g00627 541 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 292 IPR004827 GO:0003700|GO:0006355
Vifa3g00627 541 MobiDBLite consensus disorder prediction 138 165 - -
Vifa3g00627 541 MobiDBLite consensus disorder prediction 89 112 - -
Vifa3g00627 541 MobiDBLite consensus disorder prediction 226 253 - -
Vifa3g00627 541 FunFam BZIP family transcription factor 249 298 - -
Vifa3g00627 541 Pfam Seed dormancy control 341 416 IPR025422 GO:0006351|GO:0043565
Vifa3g00627 541 PANTHER TRANSCRIPTION FACTOR TGA9 156 540 - -
Vifa3g00627 541 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700|GO:0006355
Vifa3g00627 541 CDD bZIP_HBP1b-like 250 302 - -
Vifa3g00627 541 Gene3D - 249 298 - -
Vifa3g00627 541 ProSiteProfiles DOG1 domain profile. 323 537 IPR025422 GO:0006351|GO:0043565
Vifa3g00627 541 SMART brlzneu 246 319 IPR004827 GO:0003700|GO:0006355
Vifa3g00627 541 MobiDBLite consensus disorder prediction 186 218 - -
Vifa3g00627 541 MobiDBLite consensus disorder prediction 1 112 - -
Vifa3g00627 541 Pfam bZIP transcription factor 250 288 IPR004827 GO:0003700|GO:0006355
Vifa3g00627 541 SUPERFAMILY Leucine zipper domain 250 292 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00627 Vifa-Chr3 112868688 112875033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00627 112 541 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 62.302 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa3g00627 DOG1 7.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00627 K14431 - gmx:100799713 706.057