Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00615 ATGGTAACCATTCGTGTAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACCGTACTTCAAGTAGGCAATGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGAGGGTGAATTAGTAGAATTTGAAGAAAGTACAATAGGCATTGCTTTGAATTTGGAATCAAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGATGATACAAGAGGGAAGTTCCGTAAAAGCAACAGGAAGAATTGCTCAGATACCGATAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGACGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGGTTAATCGAATCTCCCGCTCCCGGTATTATTTCCAGACGGTCCGTGTATGAGCCCCTTCAAGCGGGACTTATTGCTATTGATTCTATGATCCCTATAGGGTGTGGCCAGCGAAAATTGATTATTGGGGACAGACAAACTGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTCGTAAATTCTTTACAAGAAAGAGGAGCAATGGAATACACTATTATAGTGGCTGAAACAACAAATTCCCCAGCTACATTACAATACCTCGCGCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGCCACACTTTAATCATTTATGATGATCCCTCCAAACAAGCACAAGCTTATCGCCAAATGTCTCTTCTATTACAAAGACCACCAGGTCGTGAAGCTTATCCCGGGGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGATGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATAGTGGATCGGCGGCTCAAATAAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCTCTTCAGATCTCGATAAAGCCACGCAAAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTTCTTAAACAATCCCAATCAGCTCCTCTTACGTTGGAAGAACAGATAATAACTATTTATACTGGAACGAACAGTTATCTTGATTCATTAGAAATTGAACAGGTAAGGAAATTTCTCCTTGAGTTTCGGGCTTATTTAAAAACGAATAAACCTAAATTCAACAAAATCATATCTTCAACCAAGACATTCACTGGGGAAGCAGAAGCCATTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTTACTTCAGGAACAAGTAGAAAAAAATTGA 1368 0.3889 MVTIRVDEISKIIRERIEQYNTEVKIVNTGTVLQVGNGIARIYGLDEVMEGELVEFEESTIGIALNLESKNVGVVLMGDGLMIQEGSSVKATGRIAQIPISEGYLGRVVNALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQAGLIAIDSMIPIGCGQRKLIIGDRQTAIGQKASSVAQVVNSLQERGAMEYTIIVAETTNSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLQRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIDETQSGDVSAYIPTNSGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFSSDLDKATQNQLARGQRLREFLKQSQSAPLTLEEQIITIYTGTNSYLDSLEIEQVRKFLLEFRAYLKTNKPKFNKIISSTKTFTGEAEAILKEAIQEQMELFLLQEQVEKN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00615 455 Gene3D - 3 94 IPR023366 -
Vifa3g00615 455 Gene3D - 96 174 IPR027417 -
Vifa3g00615 455 CDD F1-ATPase_alpha_CD 95 311 IPR033732 GO:0032559
Vifa3g00615 455 FunFam ATP synthase subunit alpha 318 448 - -
Vifa3g00615 455 Pfam ATP synthase alpha/beta chain, C terminal domain 317 441 IPR000793 GO:0015986
Vifa3g00615 455 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 93 IPR004100 GO:0046034|GO:1902600
Vifa3g00615 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 314 IPR027417 -
Vifa3g00615 455 FunFam ATP synthase subunit alpha, mitochondrial 174 324 - -
Vifa3g00615 455 CDD ATP-synt_F1_alpha_C 321 446 IPR000793 GO:0015986
Vifa3g00615 455 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 175 317 IPR000194 GO:0005524
Vifa3g00615 455 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 95 IPR036121 GO:0046034|GO:1902600
Vifa3g00615 455 Gene3D - 319 446 IPR038376 -
Vifa3g00615 455 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 318 445 - -
Vifa3g00615 455 FunFam ATP synthase subunit alpha 1 94 - -
Vifa3g00615 455 Gene3D - 175 318 - -
Vifa3g00615 455 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 175 311 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa3g00615 455 Hamap ATP synthase subunit alpha [atpA]. 2 447 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa3g00615 455 Coils Coil 449 455 - -
Vifa3g00615 455 CDD ATP-synt_F1_alpha_N 28 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00615 Vifa-Chr3 111493718 111495249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00615 87 327 Primary Pumps ATPases(2) AT1G20260 24.648 4.62e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00615 K02111 - gmx:3989298 747.658