Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00601 ATGATATTAGGGAATCTCATTGCTATTACCCAAACAAGCATGAAACGTATGCTTGCCTATTCGTCCATAGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCTCCATGAATATAGGAACTTTTGCTTGCATTGTGTTATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACGAAAGATCCTTTTTTGACTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGAATTGGAGTATAATAATATTGCACCCTCCGATAATTCGGACAAAGGGAGAGGGCCTCGTTTGAAAAAAATACGCCGTCTGGGGGCTTTACCAGGACTAACCAGTAAACAGCTTCTAGTTGGAAGCGAACAATCGCGCTCCAGTGAAAAAAGGGAAAAAAGGGAAAAAAGGGAAAAATCTTACTATTCTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTCCAGAACGCCAATTGCTGAAATATGTTCGTATCGCTGGAAAAGCGAAAGGGTCAACCGGTCAAGTTTTACTTCAATTACTTGAAATGCGTTTGGATAACATACTTTTTCGATTGGGTATGGCTGTGACTATTCCTCAAGCCCGTCAATTAGTTAACCACAGACATGTTTTAGTTAATGGTCGTATAGTAAATATACCAAGTTATCGTTGTAAACCTGAAGATATTATTACAGCCAAGGATGAACAAAAATCTAGAACTCTGATTCAAAATTCTCTTCAATCAGCCCCCCGCGAAAAATTGCCAACCCATTTGACTCTTGATCCATCCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTCAATGGGTTGGTTTGAAAATTAAGGAATTGCTGGTTGTAGAATATTATTCTCGTCAGACTAAAACCTAG 984 0.376 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNIGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLTLSLALCLLSLGGLPPLAELEYNNIAPSDNSDKGRGPRLKKIRRLGALPGLTSKQLLVGSEQSRSSEKREKREKREKSYYSIRLEEKQKLRFHYGLPERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAVTIPQARQLVNHRHVLVNGRIVNIPSYRCKPEDIITAKDEQKSRTLIQNSLQSAPREKLPTHLTLDPSQYKGLVNQIIDSQWVGLKIKELLVVEYYSRQTKT 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00601 327 MobiDBLite consensus disorder prediction 146 165 - -
Vifa3g00601 327 NCBIfam 30S ribosomal protein S4 123 323 IPR005709 GO:0003735|GO:0006412|GO:0015935
Vifa3g00601 327 FunFam 30S ribosomal protein S4, chloroplastic 212 308 - -
Vifa3g00601 327 ProSitePatterns Ribosomal protein S4 signature. 211 235 IPR018079 GO:0019843
Vifa3g00601 327 Gene3D - 212 308 IPR036986 GO:0003723
Vifa3g00601 327 CDD S4 213 272 - -
Vifa3g00601 327 SMART Ribosomal_S4_2 121 212 IPR001912 GO:0019843
Vifa3g00601 327 SUPERFAMILY Alpha-L RNA-binding motif 122 323 - -
Vifa3g00601 327 ProSiteProfiles S4 RNA-binding domain profile. 213 276 - -
Vifa3g00601 327 SMART s4_6 213 277 IPR002942 GO:0003723
Vifa3g00601 327 Pfam Ribosomal protein S4/S9 N-terminal domain 123 212 IPR001912 GO:0019843
Vifa3g00601 327 PANTHER NADH DEHYDROGENASE 1 106 - -
Vifa3g00601 327 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 123 323 - -
Vifa3g00601 327 MobiDBLite consensus disorder prediction 151 165 - -
Vifa3g00601 327 FunFam 30S ribosomal protein S4, chloroplastic 121 221 - -
Vifa3g00601 327 Pfam Proton-conducting membrane transporter 1 107 IPR001750 -
Vifa3g00601 327 Pfam S4 domain 213 260 IPR002942 GO:0003723
Vifa3g00601 327 Hamap 30S ribosomal protein S4 [rpsD]. 119 323 IPR005709 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00601 Vifa-Chr3 111408079 111411503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00601 210 257 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 45.833 1.06e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00601 K02986 - cave:30215214 315.079