Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00598 ATGGAATACACTATTATAGTGGCTGAAACAGCAAATTCCCCAGCTACATTACAATACCTCGCGCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGCCACACTTTAATCATTTATGATGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCTTATCCCGGAGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCTATTACAGACGGCCAAATATTCTTATTTGCCGATTTATTCAATGCTGGGATCAGACCCGCAATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATAAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTTGCAGAATTAGAAGCTTTTGCACAATTCTCTTCAGATCTCGATAAAGCCACGCAAAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACTGTGGAAGAACAGATAATAACTATTTATACTGGAACGAACGGTTATCTTGATTCATTAGAAATTGAACAGGTAAGGAAATTTCTCCTTGAGTTCCGGGCTTATTTAAAAACGAATAAACCTAAATTCAACGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAGAAGCCATTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTTACTTCAGGAACAAGTAGAAAAAAATTGA 879 0.3891 MEYTIIVAETANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFSSDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNGYLDSLEIEQVRKFLLEFRAYLKTNKPKFNEIISSTKTFTGEAEAILKEAIQEQMELFLLQEQVEKN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00598 292 FunFam ATP synthase subunit alpha, mitochondrial 1 154 - -
Vifa3g00598 292 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 1 147 IPR000194 GO:0005524
Vifa3g00598 292 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 283 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa3g00598 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 153 IPR027417 -
Vifa3g00598 292 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 155 282 - -
Vifa3g00598 292 Pfam ATP synthase alpha/beta chain, C terminal domain 154 278 IPR000793 GO:0015986
Vifa3g00598 292 Gene3D - 1 154 IPR027417 -
Vifa3g00598 292 FunFam ATP synthase subunit alpha 155 285 - -
Vifa3g00598 292 Gene3D - 155 283 IPR038376 -
Vifa3g00598 292 ProSitePatterns ATP synthase alpha and beta subunits signature. 138 147 IPR020003 GO:0005524
Vifa3g00598 292 CDD ATP-synt_F1_alpha_C 158 283 IPR000793 GO:0015986
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00598 Vifa-Chr3 111372764 111373642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00598 1 160 Primary Pumps ATPases(2) AT4G38510 32.298 1.22e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00598 K02111 - gmx:3989298 509.99