Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00574 ATGGTTCATTACGTGAATCTCATCTTCGTTGTGTTCTCAGTAATTTTGATTTCTCAGAGCTTGGCATACACCAATCCACTTGACGTCACAGCCCTCCAGGATCTATACAGGAGCTTAAACAACCCTCAAGGGCTGCACGGATGGAACGGTGGTGATCCTTGTGAGGAGTATTGGACAGGAGTAGCTTGTTCTGAGTCCTCAGTTATACATCTCAAAATTCAAGGATTGAACCTCACCGGATATCTTGGATCCTCGCTGTATAATCTACAAAGTTTGAAGATATTTGATATCAGTTCCAACAGCATAATGGGTGAAATACCATACGGATTACCCCCAAATGCCACACATATAAACATGGCCTGCAACTATTTGAGCCAGAATATCCCTTATTCATTATCAAACATGAAAAAATTAAGACATCTGAATTTAAGCCACAACTTCATGTATGGGCCAATTGGTAATGTCTTCACTGGCTTAGATAATCTCAAGGAAATGGACCTTTCTTACAATAATTTCACAGGAGATCTGCCAAGTTCATTTGGTTCCTTGATGAACCTTGAGAAATTGTTCCTGCAGAATAACAGATTTACTGGATCTGTCACGTACCTGGGGGAGCTTCCGCTCATTTATTTGAACATTCAAGAAAACTTGTTTAGTGGCATTCTTCCACAACACTTTCAGTCCATACCAAACTTATGGATTGGTAGCAATATGTTCCATGCAGTGGACGGCACTCCTCCTTGGGGCTTTCCTTTGGACGCTGTACCAGTTGAACACAATACTAGTCGCCCACCCACAACCCAAGCAAATGCCATCGAGAATTATGCTCCTACTAAAGTAAGAAAACAACAGAAGAAGAAAATGGGCCTTGGAGGAATAGCTTTTATAGTTGGTGGGGGGACATTATTGGTAACAGGATTGGCGCTCTTCATTGCAATCGGCATGAATAAATTTCACATGCAAAAATTGAAGAACTTCTTCTTCGAAAGCAATGACCATAGTCCATTTTCTATTCATTCATTTCCTTCACATCCATTTCCTTCTCATCCAATCGGTGCAGCCAAAGAGGTCTCTTATGCGGCACAAGATGATATGCTGCAAATCCCACCTTTCAATGCTGCATCCCTTTTGCATCCAAGGCGGTTACCTTCCCAGAACCATAAAAGAAAGGGGGAAACGTCAAGAAGAAGTTTTTCTGAAAGAGACAAATTCACTGGAAGGACGAAGGTTTACACAGTAGCTGAGCTTCAGTTGGTTACTAACAGCTTCAGTGAAGACAACCTTCTGGGAGTCGGCTCTCTTGGCTCTGTTTACAGAGCTGAGTTTCCAGATAACAAGGTTTTGGTTGTGAAGAACATCCAAATGGCAGGCTTATCTTTCAGTGAAGAGGAAAAGTTCTTAGACGTGGTTTGTACAGCTTCCCGTCTGAAGCACCCCAATATTGTTGCCCTTAAAGGTTACTGTTTGGAGCACGGCCAACATCTTCTTGTCTATGATTATGTCAGAAATTTAACCCTAGACAATGCTCTACACAGTGCAGCATACAAACCTTTATCCTGGGGTCTTCGTCTCCGAATTTCTCTAGGTGTTGCACAAGCTCTGGACTATCTGCACTCCACATTCTCTCCTCCTGTTGCCCATGGCAACTTGAAAGCTGCCAATATTTTACTAGACGAAAATCTGATTCCTCGTGTTTCTGACTGTGGCTTGGCTATTTTTAAGCCACTGACCAACACTACAGCTAAAATTCGGGCTTCTGAGATTTCTATTAGAGATACTGGGTACAATTCACCAGACCATGGCCAACCAGGAGTTAGCAACACAAAGAGTGATGTCTTTGCCTTTGGGGTGTTGCTTTTGGAGCTGTTATCAGGAAGAAAACCGTTTGAAAGTTTTATGCCAAAGGAAGAGCAATATCTAGCAAATTGGGCTTCATTGAGGCTTCATGATAGCGAGAGTTTGGAGCAAATGGTGGATCCGGCAATTAAAAGAACATTTTCATCAAAGGCTCTTTCTCGTTATGCTGATATCATCTCCTTGTGTACTCAGCCTGTAAAGGAATTCCGGCCTCCAATGTCTGAAATAGTGGACTCTCTTGTATCTTTTATGCAAAAGCTCAGCGTGTCTAAGAGCACTGGTGGTGTAGCAGATGGCACGGAGTTTGATCCTCTTGAGAGATCTTTTCGTACAACCACATCTCGCTTTATGGCATCCCCATCAATGAGCTATGTATCTGTATGA 2241 0.4253 MVHYVNLIFVVFSVILISQSLAYTNPLDVTALQDLYRSLNNPQGLHGWNGGDPCEEYWTGVACSESSVIHLKIQGLNLTGYLGSSLYNLQSLKIFDISSNSIMGEIPYGLPPNATHINMACNYLSQNIPYSLSNMKKLRHLNLSHNFMYGPIGNVFTGLDNLKEMDLSYNNFTGDLPSSFGSLMNLEKLFLQNNRFTGSVTYLGELPLIYLNIQENLFSGILPQHFQSIPNLWIGSNMFHAVDGTPPWGFPLDAVPVEHNTSRPPTTQANAIENYAPTKVRKQQKKKMGLGGIAFIVGGGTLLVTGLALFIAIGMNKFHMQKLKNFFFESNDHSPFSIHSFPSHPFPSHPIGAAKEVSYAAQDDMLQIPPFNAASLLHPRRLPSQNHKRKGETSRRSFSERDKFTGRTKVYTVAELQLVTNSFSEDNLLGVGSLGSVYRAEFPDNKVLVVKNIQMAGLSFSEEEKFLDVVCTASRLKHPNIVALKGYCLEHGQHLLVYDYVRNLTLDNALHSAAYKPLSWGLRLRISLGVAQALDYLHSTFSPPVAHGNLKAANILLDENLIPRVSDCGLAIFKPLTNTTAKIRASEISIRDTGYNSPDHGQPGVSNTKSDVFAFGVLLLELLSGRKPFESFMPKEEQYLANWASLRLHDSESLEQMVDPAIKRTFSSKALSRYADIISLCTQPVKEFRPPMSEIVDSLVSFMQKLSVSKSTGGVADGTEFDPLERSFRTTTSRFMASPSMSYVSV 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00574 746 Pfam Protein tyrosine and serine/threonine kinase 427 699 IPR001245 GO:0004672|GO:0006468
Vifa3g00574 746 FunFam Leucine-rich repeat receptor-like protein kinase 501 710 - -
Vifa3g00574 746 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Vifa3g00574 746 SUPERFAMILY Protein kinase-like (PK-like) 399 699 IPR011009 -
Vifa3g00574 746 ProSiteProfiles Protein kinase domain profile. 423 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00574 746 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 704 IPR046959 -
Vifa3g00574 746 Gene3D Phosphorylase Kinase; domain 1 384 500 - -
Vifa3g00574 746 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 388 500 - -
Vifa3g00574 746 MobiDBLite consensus disorder prediction 379 400 - -
Vifa3g00574 746 Gene3D Transferase(Phosphotransferase) domain 1 502 715 - -
Vifa3g00574 746 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 250 - -
Vifa3g00574 746 Gene3D Ribonuclease Inhibitor 25 250 IPR032675 -
Vifa3g00574 746 MobiDBLite consensus disorder prediction 386 400 - -
Vifa3g00574 746 Pfam Leucine rich repeat 155 196 IPR001611 GO:0005515
Vifa3g00574 746 SUPERFAMILY L domain-like 25 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00574 Vifa-Chr3 109595993 109601282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00574 7 745 Strubbelig Receptor Gene Family AT5G06820 53.504 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vifa3g00574 PK_Tyr_Ser-Thr 2.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00574 - - tpra:123896060 1268.83