Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00572 ATGAATGAGAATAAGATTGATTATTTAGGAAGGATTCAACAAAACCATATACTAAATGGTGATTGTTCGAGTCACTATTTTGATATGAGAAATGCTTCAAATATTGGAAATTTTAGTCAACCATTTTCAATGGAACAATCATCATCTAGCACAATTATAAGCCGTTTTGAGTCACCAAATTCAGCTTTTTATGCAACAGAAATTTGCATGGGATTTCCATGTTATGATTTGGAGTTTCCTTTGTATCAATGTCCAAGGGAAAATATTTTCCATGATTCTTCAACAAACCAAACTAGCAATAACTTTGATTTGTCAAATTTTAACACTTTGCAACCATTGGTTAGATCATCTCAGTTGAATAGTGATGATCAATGTTGTAGATCTCCTCAGAAATCCAATGGAAATTTTCAACATAAGTTCTTCATTGATGATGCGGCTCCATTGATTCATTCTAATGGAAATCAAGATCATAAATTGAATTTCTCTTATCAGCAAGAGAAAGTTTCTCGAACAATGTCAACAGGAAATGTGTCAACAACTTCTGGAAACCCTTGTGGTTCACCAGTCTCGAGTAAGACAAGAATAAGATGGACTCAAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGTCTTGGAGGTGCCGAGAAGGCGACGCCAAAAGCCATATTAAGGCTGATGGAATCAGATGGATTGACAATCTTCCATGTTAAAAGTCATCTGCAGAAATATAGAATTGCGAAATACATGCCAGAACCAGCCCAAGGGAAATGTGAGAAAAGAACTCATGTAGAGAATGTGCATCTCGATGTCAAATCTGGCTTGCAAATAAGAGAGGCGCTTCAGCTTCAACTCGATGTTCAAAGGCGTCTTCACGAACAACTCGAGATTCAGAGAAAATTACAGTTACGAATTGAGGAACAAGGAAAACAGTTGAAGATGATGTTTGACCAACAGCAGAAGACAAATATTGGCCAACTGAACACTCAGAATTTGGATAATACATCAAATAATGATTCACAAATTAGTCCTAAAGATATTGAGGTTTCGATTTTGGAAGGGTCGGAAAATACCTTATTCCCTTCAAAGATAAGTTAG 1098 0.3607 MNENKIDYLGRIQQNHILNGDCSSHYFDMRNASNIGNFSQPFSMEQSSSSTIISRFESPNSAFYATEICMGFPCYDLEFPLYQCPRENIFHDSSTNQTSNNFDLSNFNTLQPLVRSSQLNSDDQCCRSPQKSNGNFQHKFFIDDAAPLIHSNGNQDHKLNFSYQQEKVSRTMSTGNVSTTSGNPCGSPVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPEPAQGKCEKRTHVENVHLDVKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTNIGQLNTQNLDNTSNNDSQISPKDIEVSILEGSENTLFPSKIS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00572 365 Pfam Myb-like DNA-binding domain 196 245 IPR001005 -
Vifa3g00572 365 Coils Coil 278 298 - -
Vifa3g00572 365 Gene3D - 191 250 - -
Vifa3g00572 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 249 IPR017930 -
Vifa3g00572 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 164 346 IPR044848 GO:0003700
Vifa3g00572 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 192 247 IPR006447 GO:0003677
Vifa3g00572 365 FunFam Myb family transcription factor 191 249 - -
Vifa3g00572 365 SUPERFAMILY Homeodomain-like 190 246 IPR009057 -
Vifa3g00572 365 Pfam MYB-CC type transfactor, LHEQLE motif 275 322 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00572 Vifa-Chr3 107900198 107901964 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00572 177 319 G2-like Transcription Factor Family AT4G28610 60.274 3.97e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa3g00572 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00572 - - psat:127092497 612.068