Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00571 ATGAATGAGAATAAGATTGATTATTTAGGAAGGATTCAACAAAACCATATACTAAATGGTGATTGTTCGAGTCACTATTTTGATATGAGAAATGCTTCAAATATTGGAAATTTTAGTCAACCATTTTCAATGGAACAATCATCATCTAGCACAATTATAAGCCGTTTTGAGTCACCAAATTCAGCTTTTTATGCAACAGAAATTTGCATGGGATTTCCATGTTATGATTTGGAGTTTCCTTTGTATCAATGTCCAAGGGAAAATATTTTCCATGATTCTTCAACAAACCAAACTAGCAATAACTTTGATTTGTCAAATTTTAACACTTTGCAACCATTGGTTAGATCATCTCAGTTGAATAGTGATGATCAATGTTGTAGATCTCCTCAGAAATCCAATGGAAATTTTCAACATAAGTTCTTCATTGATGATGCGGCTCCATTGATTCATTCTAATGGAAATCAAGATCATAAAGTTTCATGTGGTTCATATGATTTTCCTGTTGTTTCTCAGTTGAATTTCTCTTATCAGCAAGAGAAAGTTTCTCGAACAATGTCAACAGGAAATGTGTCAACAACTTCTGGAAACCCTTGTGGTTCACCAGTCTCGAGTAAGACAAGAATAAGATGGACTCAAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGTCTTGGAGGTGCCGAGAAGGCGACGCCAAAAGCCATATTAAGGCTGATGGAATCAGATGGATTGACAATCTTCCATGTTAAAAGTCATCTGCAGAAATATAGAATTGCGAAATACATGCCAGAACCAGCCCAAGGGAAATGTGAGAAAAGAACTCATGTAGAGAATGTGCATCTCGATGTCAAATCTGGCTTGCAAATAAGAGAGGCGCTTCAGCTTCAACTCGATGTTCAAAGGCGTCTTCACGAACAACTCGAGATTCAGAGAAAATTACAGTTACGAATTGAGGAACAAGGAAAACAGTTGAAGATGATGTTTGACCAACAGCAGAAGACAAATATTGGCCAACTGAACACTCAGAATTTGGATAATACATCAAATAATGATTCACAAATTAGTCCTAAAGATATTGAGGTTTCGATTTTGGAAGGGTCGGAAAATACCTTATTCCCTTCAAAGATAAGTTAG 1137 0.3606 MNENKIDYLGRIQQNHILNGDCSSHYFDMRNASNIGNFSQPFSMEQSSSSTIISRFESPNSAFYATEICMGFPCYDLEFPLYQCPRENIFHDSSTNQTSNNFDLSNFNTLQPLVRSSQLNSDDQCCRSPQKSNGNFQHKFFIDDAAPLIHSNGNQDHKVSCGSYDFPVVSQLNFSYQQEKVSRTMSTGNVSTTSGNPCGSPVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPEPAQGKCEKRTHVENVHLDVKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTNIGQLNTQNLDNTSNNDSQISPKDIEVSILEGSENTLFPSKIS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00571 378 FunFam Myb family transcription factor 204 262 - -
Vifa3g00571 378 Pfam Myb-like DNA-binding domain 209 258 IPR001005 -
Vifa3g00571 378 Pfam MYB-CC type transfactor, LHEQLE motif 288 335 IPR025756 -
Vifa3g00571 378 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677
Vifa3g00571 378 Gene3D - 204 263 - -
Vifa3g00571 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 262 IPR017930 -
Vifa3g00571 378 Coils Coil 291 311 - -
Vifa3g00571 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 183 359 IPR044848 GO:0003700
Vifa3g00571 378 SUPERFAMILY Homeodomain-like 203 259 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00571 Vifa-Chr3 107900198 107901964 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00571 190 332 G2-like Transcription Factor Family AT4G28610 60.274 6.77e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa3g00571 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00571 - - psat:127092497 602.823