Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00569 ATGCTCCCTCGTAGCAACAACGTTCACATTTCCAACATCATCATCACCCTCCTCTGTCTCTGTCTCTCCATTCCCCTCGCTTCATCTCTCAACTCAGACGGTCTCTCATTACTCGCCTTAAAAGCCGCCATAGACGTCGACCCCACCGGAATCCTTAACTCGTGGTCCGACTCAGTTCCCACACCCTGTAACTGGGAAGGAGTATCATGCACCACCACCACAGACCGAGTCACTCAACTCACCCTCCCTTCAAAATCCCTCTCAGGCTACCTCCCCTCCGAGTTAGGCCAACTCACCGAACTCACCTCCCTTATCCTCCACAACAACAACTTCACCAAAACCATTCCTTCATCACTCTTCAACACCACCAACAAACTCATCATCTTAGATCTTTCTCACAACTCTCTCTCTGGTCCTCTTCCTTCATCATTCACTTCACTCAAATCTCTCATCCATTGTGATCTCTCTTCCAATTTTCTCAACGGCTCTATTCCGGACTCGTTAACCGAACTCACCGCTCTAACCGGTACTTTGAATCTCTCTTTTAATTCTTTCTCCGGTGGGATACCGGCTTCTTTAGGTAATCTTCCGGTGGAAGTTAGTTTGGATCTCCGTGATAATAATCTCACTGGGGAAATACCTCAGGTGGGATCCTTGTTAAATCAAGGACCCACTGCTTTTTCCGGAAATCCCGGTCTTTGCGGGTTTCCGTTACGGGACCTTTGTCCGGATGGAGATAAAGTCCCGGATCGTTTACCGGAAGACCCGAATCCGAACCCGATTGCTATTCAAACGGGTTCGGTTGAGGCTCAGAGGCAAAGAAGTGGGTTGTTGGTAGTTGTTGTGGTTTTGGTTTCTCTTGGGGGTGTGGTGGTTTTGATGTCGGTGTTAGTACTCCGGCGACGGAGAGGGAAGAGGTTAAATGAAGGAGAAGGGGGAGGTGGGTTTGAAAAGAGGAAGGTGGAGAGTGAGGTTTTGGGTTCTGGGGAAGAGCAGAAGGGGAGATTTGTGGTGTTGGATGAAGGGTTTGGGTTGGAGTTGGAGGATTTGTTGAGGGCTTCTGCTTATGTGGTGGGGAAGAGTAGGAGTGGGATTGTGTATAAGGTTGTTGGTGTTGGGAAAGGGTTGGTTCCGGTGGGGACGGCGGTGGCTGTTCGGCGGCTGAGTGAGGGGGATGATGGAGGTTTAAGGTTTAAGGAATTTGAGTATGAGGTGGAAGGTATTGGGAGGGTGAGACACCCTAATGTTGTGCCTTTGAGAGCTTATTACTATGCAAGTGATGAGAAACTTCTCATCACTGATTTCATTCGCAATGGAAGCTTGCACACTGTCTTGCATGGTGGGCCATCCGATTCATTGCCACCACTATCATGGCCAGCAAGATTAAAAATTGCTCAAGGAACTGCAAGGGGATTGATGTACATACATGAGTTTAGTGGTAGGAAGTACGTCCACGGCAACATAAAATCAACGAAAATACTGTTGGACGATGATCTCCATCCTTATATATCCGGTTTCGGACTTACTCGTCTTGGTTTAGGTATGTCAAAGTCTACCACCACTTTCACACATAGGCGGCAAAATTCAAACCAGTCTATTGTAGCCTCAGCAATGAGTTCAAAAGTTGCTGCTTCCTCGAAGAACTACTCGGCACCCGAGTTGCGTATAACTGGAGCAAAGTTCACTCAGAAATGTGATGTGTATTCTTTTGGTATAGTGCTGTTAGAACTTTTGACAGGTCGGTTGCCGGATTTGGGATCAGAAAATGATCAGAAGGAGCTTGAGAGTTTTGTGAGGAAAGCATTTAGGGAGGAACAGCCCTTGTCAGAGATTATCGATCCAGCACTTCTGCCCGAGGTTAATGCTAAAAAACAGGTTGTTGCAGCGTTTCATGTTGCACTGAACTGCACAGAACTTGATCCCGAATTGCGACCGAAAATGAGAACTGTGTCTGAGAGCCTTGATCACATCAAAATTCAGTAA 1983 0.4735 MLPRSNNVHISNIIITLLCLCLSIPLASSLNSDGLSLLALKAAIDVDPTGILNSWSDSVPTPCNWEGVSCTTTTDRVTQLTLPSKSLSGYLPSELGQLTELTSLILHNNNFTKTIPSSLFNTTNKLIILDLSHNSLSGPLPSSFTSLKSLIHCDLSSNFLNGSIPDSLTELTALTGTLNLSFNSFSGGIPASLGNLPVEVSLDLRDNNLTGEIPQVGSLLNQGPTAFSGNPGLCGFPLRDLCPDGDKVPDRLPEDPNPNPIAIQTGSVEAQRQRSGLLVVVVVLVSLGGVVVLMSVLVLRRRRGKRLNEGEGGGGFEKRKVESEVLGSGEEQKGRFVVLDEGFGLELEDLLRASAYVVGKSRSGIVYKVVGVGKGLVPVGTAVAVRRLSEGDDGGLRFKEFEYEVEGIGRVRHPNVVPLRAYYYASDEKLLITDFIRNGSLHTVLHGGPSDSLPPLSWPARLKIAQGTARGLMYIHEFSGRKYVHGNIKSTKILLDDDLHPYISGFGLTRLGLGMSKSTTTFTHRRQNSNQSIVASAMSSKVAASSKNYSAPELRITGAKFTQKCDVYSFGIVLLELLTGRLPDLGSENDQKELESFVRKAFREEQPLSEIIDPALLPEVNAKKQVVAAFHVALNCTELDPELRPKMRTVSESLDHIKIQ 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00569 660 FunFam Leucine-rich repeat receptor-like kinase 35 148 - -
Vifa3g00569 660 Gene3D Transferase(Phosphotransferase) domain 1 436 660 - -
Vifa3g00569 660 FunFam Leucine-rich repeat receptor-like protein kinase 149 244 - -
Vifa3g00569 660 Pfam Protein kinase domain 358 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00569 660 SUPERFAMILY Protein kinase-like (PK-like) 357 654 IPR011009 -
Vifa3g00569 660 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vifa3g00569 660 ProSiteProfiles Protein kinase domain profile. 352 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00569 660 SUPERFAMILY L domain-like 31 240 - -
Vifa3g00569 660 Gene3D Phosphorylase Kinase; domain 1 344 435 - -
Vifa3g00569 660 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 658 IPR046959 -
Vifa3g00569 660 Pfam Leucine rich repeat 100 158 IPR001611 GO:0005515
Vifa3g00569 660 Gene3D Ribonuclease Inhibitor 89 248 IPR032675 -
Vifa3g00569 660 Gene3D Ribonuclease Inhibitor 27 88 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00569 Vifa-Chr3 106459086 106462441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00569 30 658 Receptor kinase-like Gene Family AT3G57830 57.298 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa3g00569 Pkinase 9.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00569 - - tpra:123899429 991.875