Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00568 ATGGATGCTTCTTTTGGGTTGGTTGGTTCATTGGGAATGGAGCATGAAACATCTCATAAGAGCTTTGGTTCAAATCTTCTTAGGCAGGGTAGTTCACCTGCTGGTCTTTTCTGCAACATTTCATTCCAAAATGGGTTTGCTGCTATGAAGGGCGTGGGAAACTATGTTGCGATAAATGGAAGTAATAGCGATGTTAGTCCGTCCATTAATCGATTGACCAGTCAAGTTAGCTTTCCTTCAAGAAATGCATCTTCCTTGGGAATGTTACCACAAATCTCTGAAATCGATAGCGAGGATATTGAAGCAACCAGCCCTGATGACGGAGGCAGCAATGGTGATACTATGCATTATGGTTCTGGATTTCCCTACAGTTCTTGGAATGATACTCAATCATTCTCAGAAAATCTCAGTGGCTTGAAACGAGGACGAAGCGGCAACGAAAAAATGTTTTCTGATTTTCAGAACGGAGGACTAGGAAATCAAGTTAATACATTATCACATCACTTGAGTTTACCGAAGACTTCATCAGAGATGATTGCTATGGAGAAGTTGTTTCAGTTTCAGGACTCCGTTCCTTGTAAAATAAGAGCGAAACGAGGTTGTGCTACTCATCCTCGAAGTATTGCCGAAAGGGTAAGAAGAACTAGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTTCCAAACATGGACAAGCAAACTAACACATCAGACATGTTGGACTTGGCTGTTGATTACATTAAAGAACTTCAAAAACAATTTAAGTTTCTAAGTGATAAACGGGCAAACTGCAAATGTATGAGGATGCAGAAGGAAGATACAAATCAAATTCCTTGA 840 0.4012 MDASFGLVGSLGMEHETSHKSFGSNLLRQGSSPAGLFCNISFQNGFAAMKGVGNYVAINGSNSDVSPSINRLTSQVSFPSRNASSLGMLPQISEIDSEDIEATSPDDGGSNGDTMHYGSGFPYSSWNDTQSFSENLSGLKRGRSGNEKMFSDFQNGGLGNQVNTLSHHLSLPKTSSEMIAMEKLFQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKELQKQFKFLSDKRANCKCMRMQKEDTNQIP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00568 279 Gene3D - 197 261 IPR036638 GO:0046983
Vifa3g00568 279 SMART finulus 207 257 IPR011598 GO:0046983
Vifa3g00568 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 268 IPR036638 GO:0046983
Vifa3g00568 279 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 21 275 - -
Vifa3g00568 279 FunFam Transcription factor bHLH130 family 202 271 - -
Vifa3g00568 279 MobiDBLite consensus disorder prediction 96 117 - -
Vifa3g00568 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 251 IPR011598 GO:0046983
Vifa3g00568 279 Pfam Helix-loop-helix DNA-binding domain 206 252 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00568 Vifa-Chr3 105429294 105431747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00568 4 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 56.061 2.30e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g00568 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00568 - - gmx:100819605 439.884