Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00560 ATGTCTGAGTTTGACACAAACATCCCAACAACTTTTGATCCCTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCCGGTGCCGGGACAAAAGAATATGTTCATGTCCGTGTACAACAGCGTAACGGAAGGAAAAGCTTAACAATTGTTCAAGGGTTAAAGAAAGAGTTCAGCTATAGCAAGATACTCAAGGACTTGAAGAAAGAATTTTGCTGTAATGGTACTGTTGTCGAGGACCCTGAGTTGGGCCAGGTCATACAACTTCAGGGAGATCAAAGGAAGAATGTTTCTAATTTCCTTGTGCAGGCTGGCATTGTAAAGAAGGAGAATATCAAGCTTCATGGTTTTTAA 348 0.4224 MSEFDTNIPTTFDPFAEANAEDSGAGAGTKEYVHVRVQQRNGRKSLTIVQGLKKEFSYSKILKDLKKEFCCNGTVVEDPELGQVIQLQGDQRKNVSNFLVQAGIVKKENIKLHGF 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00560 115 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 8 115 - -
Vifa3g00560 115 Pfam Translation initiation factor SUI1 30 104 IPR001950 GO:0003743|GO:0006413
Vifa3g00560 115 NCBIfam translation initiation factor SUI1 7 115 IPR005874 GO:0003743
Vifa3g00560 115 Gene3D - 2 115 - -
Vifa3g00560 115 PIRSF Transl_init_SUI1_Euk 1 115 IPR005874 GO:0003743
Vifa3g00560 115 FunFam Eukaryotic translation initiation factor SUI1 2 115 - -
Vifa3g00560 115 CDD eIF1_SUI1 31 114 IPR005874 GO:0003743
Vifa3g00560 115 MobiDBLite consensus disorder prediction 1 25 - -
Vifa3g00560 115 SUPERFAMILY eIF1-like 7 115 IPR036877 GO:0003743|GO:0006413
Vifa3g00560 115 ProSiteProfiles Translation initiation factor SUI1 family profile. 33 103 IPR001950 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00560 Vifa-Chr3 102798471 102799456 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00560 1 115 Eukaryotic Initiation Factors Gene Family AT4G27130 84.348 4.89e-71 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00560 K03113 - gmx:100784390 213.772