Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00557 ATGGAGCAAACCACGTTTGAATCCATTCAATTCAACGAAGAAATTCAGGGGATCATGGCGCCGGCGTCGGAAACCGCAAGCTCCTTCACCGCACTTCTCGAGCTACCACCGACGCAGGCTGTCGAGCTTCTCCACTCACCGGAAATCACCGGAGACCCACCTCGCCATGTCATTAACCCGAAACCCTATCCCCTAACCTGTAACACAGACGATTTAATCTTCCCTTCCAACACCGCGTTGATCGAACGCGCCGCGAGATTCTCCGTTTTCGCCGGTGAGAACTTAGCAAACTCTCTGCCGGAGGTGAAAGATGAACTACCGGAAATTGAAGAAAATGGCTGTGTCTCTGATCGCACAGTCGAGAACATGAATTCCAAACACACGAAGAGGAAGGAGAGAGAGAAGAAGGTTAAAGTATCTTCCAAGAAAAACAAAACCGTCGCCGCCGACGAGAATTCCGGCAACGGCGAGGAACTCCCGTATGTTCATGTACGAGTTCGTCGTGGTCAAGCCACTGATAGCCATAGTTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGAATGAAACTATTGCAAGAGCTGGTCCCTGGTTGCAACAAGATTTCAGGAACGGCATTGGTTTTGGATAAAATCATCAACCATGTGCAATCTCTTCAGCATGAAGTAGAGACTGCATACTTTTCTTCACCAATTTTATCAATGAAACTGGCAGCAGTTAATCCAATAATTGATTTCAACCTTGACAGCATATTGGCTACAGAAGGAGTATCTCTCATGGACAGTAACTTCCCTACCACAGTTGCACCCGTCGTGTGGCCAGAAATCCCACACAATGGAAACAGACAGCAATTTCAACAACCATGGCAATCTGAAGCATTCCACCAACCACTTTGGGTGAGAGAAGAAAACACCCCTAATTTCATGACCCCAGAAAACTCACCACTATTGAGTTATGACTCATCGGCAAACTCAGTATCTCTGCACTCAAATCAGATGAAGATGGAGCTATGA 1017 0.469 MEQTTFESIQFNEEIQGIMAPASETASSFTALLELPPTQAVELLHSPEITGDPPRHVINPKPYPLTCNTDDLIFPSNTALIERAARFSVFAGENLANSLPEVKDELPEIEENGCVSDRTVENMNSKHTKRKEREKKVKVSSKKNKTVAADENSGNGEELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVETAYFSSPILSMKLAAVNPIIDFNLDSILATEGVSLMDSNFPTTVAPVVWPEIPHNGNRQQFQQPWQSEAFHQPLWVREENTPNFMTPENSPLLSYDSSANSVSLHSNQMKMEL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00557 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 232 IPR036638 GO:0046983
Vifa3g00557 338 Gene3D - 167 239 IPR036638 GO:0046983
Vifa3g00557 338 SMART finulus 176 226 IPR011598 GO:0046983
Vifa3g00557 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983
Vifa3g00557 338 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983
Vifa3g00557 338 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 120 296 IPR024097 GO:0006355
Vifa3g00557 338 MobiDBLite consensus disorder prediction 116 154 - -
Vifa3g00557 338 CDD bHLH_AtBPE_like 160 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00557 Vifa-Chr3 100393247 100397475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00557 2 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 47.594 7.08e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g00557 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00557 - - psat:127091567 585.104