Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00552 ATGGAGTCTCATGATGAAACAGGACGCCCCATACTTTGTATTAACAACTGTGGCTTCTTTGGAAGGGTTGAAACCATGAATATGTGTTCCAAATGTTACAAAGACACCTTGTTGCATAAGGAACAGGACAAACTAGCGGCTGCATCGGTTGAAAGCCTTGTGAGTGGCGGTTCAATGAAAGAGGTTGTGAATCAAGGTGCTATTGATGTACAAGTTGGAGATGTGGAGGTCAACACCAAGACGGTCTGTGCTGAGATTTCTGGAGATTCATCGACCAGTGAGATTCTGGAGACTAAAGCCAAAACAGGTCCAAACAGATGTGGAACTTGCCAGAAGCGTGTAGGATTAACTGGTTTCACTTGCAAATGCGGAAACCTATTCTGTGCAAAGCACCGATATTCAGAAAAACATGATTGCCCCTATGATTACCAAGCTGTTGGTCGGGATGCTATTGCTAAATCCAACCCCGTAATTAAGGCTGATAAGCTTGACAAATTCTAG 501 0.4371 MESHDETGRPILCINNCGFFGRVETMNMCSKCYKDTLLHKEQDKLAAASVESLVSGGSMKEVVNQGAIDVQVGDVEVNTKTVCAEISGDSSTSEILETKAKTGPNRCGTCQKRVGLTGFTCKCGNLFCAKHRYSEKHDCPYDYQAVGRDAIAKSNPVIKADKLDKF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00552 166 ProSiteProfiles Zinc finger AN1-type profile. 101 147 IPR000058 GO:0008270
Vifa3g00552 166 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Vifa3g00552 166 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Vifa3g00552 166 FunFam Zinc finger AN1-type containing 6 81 162 - -
Vifa3g00552 166 SUPERFAMILY AN1-like Zinc finger 97 161 IPR035896 -
Vifa3g00552 166 Gene3D - 1 56 - -
Vifa3g00552 166 SMART AN1_Zf_4 107 144 IPR000058 GO:0008270
Vifa3g00552 166 Gene3D - 82 162 IPR035896 -
Vifa3g00552 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 10 165 - -
Vifa3g00552 166 Pfam AN1-like Zinc finger 107 144 IPR000058 GO:0008270
Vifa3g00552 166 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Vifa3g00552 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00552 Vifa-Chr3 99063774 99064274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00552 12 166 C2H2 Transcription Factor Family AT3G52800 40.127 1.67e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00552 - - gmx:100499995 246.128