Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00550 ATGGGGAAGCACAAGAAGAAGAGAACTAGGGTTTCCGTTTCCGACGACGACGAAGAAATCGAAACCGAAATCAACAACGATTCCAATGAGAACGAAAACTCACTCTACCAGGTTCTTGGTGTGGAGAGTACGGCGACGCAACAGGAAATAAAGAAGGCGTATCATAAGTTGGCGTTGAGGCTTCATCCTGATAAGAACCCTGGCAACGAGGAAGCTAAAGCTAAGTTTCAGCAATTGCAAAGTGTTATCTCAATTCTTGGAGATGAACAAAAACGGGCAATGTATGATCAGACTGGTTCTGTTGAACACGCTGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAATATTTCAGAACAATGTACAAGAAGGTCACCGAAGCTGATATTGAGGAGTTTGAAGCAAACTACAGGGGATCTGACTCTGAGAAAAGTGATTTGATTAATCTCTACAAGGAATGCAAGGGTAATATGAACAGGTTATTCTGCTCAATGCTTTGTTCAGATCCTAAACTTGACTCACACCGATTCAAGGATATTATTGATGAGGCCATAGCTTCTGGAGAACTAAAGGAAAAGAAAGCATACAAGAAATGGGCAAAGAAAATTTCGGAAACCAAGCCACCAACTAGTCCTTTAAGGAGGAGGGAAAAATCAAATAAGGATCAAAAAACAGATCTGTATGCTATCATATCAAAACGACAAACTGAGAGGAAAGGCCAGCTTGACTCTATGTTCTCGTCTTTAATTTCAAAATATGGTGGAGACCATGCGCCAGAACCAACTGAAGAGGAATTTGAGGCTACACAAAGAAAGATGGAAAGCCGAAGAAAGATGGAAAGCGGAAGATCTTCAAAAAAGGCAAAGCGAAAATAA 876 0.4098 MGKHKKKRTRVSVSDDDEEIETEINNDSNENENSLYQVLGVESTATQQEIKKAYHKLALRLHPDKNPGNEEAKAKFQQLQSVISILGDEQKRAMYDQTGSVEHADLAGDVVQNLQEYFRTMYKKVTEADIEEFEANYRGSDSEKSDLINLYKECKGNMNRLFCSMLCSDPKLDSHRFKDIIDEAIASGELKEKKAYKKWAKKISETKPPTSPLRRREKSNKDQKTDLYAIISKRQTERKGQLDSMFSSLISKYGGDHAPEPTEEEFEATQRKMESRRKMESGRSSKKAKRK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00550 291 MobiDBLite consensus disorder prediction 257 281 - -
Vifa3g00550 291 ProSiteProfiles dnaJ domain profile. 34 99 IPR001623 -
Vifa3g00550 291 SUPERFAMILY Chaperone J-domain 32 108 IPR036869 -
Vifa3g00550 291 SMART dnaj_3 33 91 IPR001623 -
Vifa3g00550 291 Gene3D DnaJ domain 19 125 IPR036869 -
Vifa3g00550 291 MobiDBLite consensus disorder prediction 1 32 - -
Vifa3g00550 291 MobiDBLite consensus disorder prediction 201 240 - -
Vifa3g00550 291 Pfam DnaJ domain 35 96 IPR001623 -
Vifa3g00550 291 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 23 282 IPR042977 -
Vifa3g00550 291 PRINTS DnaJ domain signature 54 69 IPR001623 -
Vifa3g00550 291 PRINTS DnaJ domain signature 36 54 IPR001623 -
Vifa3g00550 291 PRINTS DnaJ domain signature 91 110 IPR001623 -
Vifa3g00550 291 PRINTS DnaJ domain signature 71 91 IPR001623 -
Vifa3g00550 291 MobiDBLite consensus disorder prediction 201 291 - -
Vifa3g00550 291 CDD DnaJ 36 88 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00550 Vifa-Chr3 98080338 98083421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00550 36 96 C2H2 Transcription Factor Family AT1G74250 39.394 2.32e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00550 K09529 - gmx:100781463 409.838