Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00549 ATGGAAGATTATGAGATTTCTGAGAAACTTGGAAGAGGAGCTTTAGGTGCAACTTTTCTTGTTCTTCATAAAACTGATAGAAAGAGGTATGTGTTGAAGAAGATTCGGTTGTCTAAGCATTCAGAGAAGTCCAAATTGACAGCGTACCAAGAGATGGACCTGATAGCAAACCTAAATTACCCTTATATTGTGGAGTATAAAGATGCTTGGGTGGAGAAGGAGGACTATATATACATTATAAGTGGCTTTTGCGAAGGAGGTGACATGGCTGAGAATATAAAGAAATCTCGAGGATCTTTTTTTCCGGAGGAGAAAGTCTGCAAATGGATGACTCAGTTGTTGCTAGCTGTGGACTACCTGCACTCTAACCGTGTGCTCCATAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGAAAACAACATTCGTCTAGGTGACTTTGGTCTTGCAAAGCTACTTGACACAGACGATCTTGCTTCTTCGGTTGTTGGAACTCTAAATTACATGTGTCCTGAGATCTTTGCCGATATGCCGTACGGTTATAAATCTGACATATGGTCGCTTGGTTGCTGCATGTTTGAAATTGTCGCACATCAACCAGCATTTCGTGCTCCGGACAGGGCTGGACTTATCAATAAAATAAATAGATCCACTATTTCTCCATTGCCAATTGTTTACTCTTCCACACTGAAACAGATTATCAAGAGCATGCTGAGGAAAAACCCTGAACACAGACCAACAGCGGCTGATTTGTTGAGACATCCTCATTTACAACCTTTTGTTCTCCGCTCTCGTAACACGCCATCTGTTTTTCTTCCGGTGCATCTCATAAGTTGTAACTCACCGAAAAAATCTTACAAATCTAGTGGTGGCAAGGACAATAGGGACAAAGATGAAGGGTCTGCAAACCGTTTGGAGAGAGTTTATCCGATTGAGGGAGATGGAGATGTACAGACAAGAAACCGCAAATTAGCAGTGTCATCGAGCACAGAAGACAACCTTGAGACTAAAATGGTTGACCCTACCAGCTACACGTTGGAATTTTCTACTAGTATTAGTGGTTCAAAGGACGAGTCAACAACATCTGAATCGACCGTTTGCAGCGTGTGCAAGGAAGCAGATTTCAAAAGTAGAGCTGTAAGAGACATGGCTGATACAGAGGTCACTTCAAAGAGTACACTAGATTCTATGCATGAAAAACAAGTATTTGCCACTGATCAACTTTCGAAGTCCTATGCAGTGACTAAAAAAGTTGAATATAGTTTTTCTAATAAAGTGTCCGATAAAGATGAAGTGCATAAGGAATCTGCAAAACCTGGGGACTCTAGTAAAACAATAATCTCCTGTGAAGACAGCAATGAAAATGACGAAGATGCGGTCACATCACGGTGTACTCCAGATAAATACAAATTTTCCAGTAAAGGTTTTGATGAGGCAGAAGTACAGAAAGAAAAAGCAAAACCTGAGGACTTCATCAAATCGATAATGTCCAGTGAATATAGAACTCGGAATGATATAGATGGGTGTATTGATGAGGTCACTTCGGAAAGTACACTAGAGTTTTTGCTTGTAGAACAATTTATCACCGAACATTTTCAGAATCCCGATGCATTTGACATAAATGCAGTAACAACAGAAGTTGAAGGTAGTTTTTCTGAAGGTTATTTTGATACTCTTTCCGACGGTGGCTTTAATACTTTTTCCGAAGCACTTACAGAAGACGCCAAACCCGAGGAATCTAGTAAATCAATCATTTACAGCAAAGACTGCAATCAAAATGATAAAGAACAGCCTATTGATGATATCACTTCGAAAAACACACTGGATTCGATGAATGAAGAACAAGAAGTTGTTGCTGAGAATTTTCCAAAATCGAATACATCGGTGACTACAAAGACTGATGGCACACTTTCCAGCCAATGTTTTGATAAAGGTGAAGCACAGAGAGAAGATGCCCTAGCCGAGGAGGACTCAAGGAAATCAATCATTTGTAGCAAAGACAGCAATGGGGATGATAAAGAACGGTCCACCGATGATATCAATTTAAAGAGAACATTGGATTCTTTACACGAACAACAAGAATTGGCCGCTGAACATTTTCAGAAGTTACATATAATTGACATAAATCCAGTGATTTCAGAAGTTGATGATACTCTTTCCAATAAAGAATCTGATATAGGTGAACCACCAAGAGAAGACACCAAACCCGAGGACTCAAGTAAATCAATCACTTACAACAATGACAATGAGGGGTCTACTGATGAGGTGACATCAACGAGCACACTTGATTCTATGCATGAAGAGCGGCGACTTTCTGTTGAACACTTTCAGAAGCCAGATGCAAATGACATAAATCCGGTGACTTCAAAAGCTGATGATACTCCTTCCAGTGAAGAGTTTGATAAAGCTGAACCACGAAGAGAAGATGCCAAACCTGCGGATTCAAGTAAATCAATCATTTGCAACAAAGACAATGACAAAGAGAGGTCTTGTGATGAAGTCACATCAACGAGCACACTCGGTTCTGTGCATGAAGAGCGACGACTTTCTGTTGGACACTTTCAGAAGCCAGATACAAATGACATAAATCCAGTGACTTCAAATGTTGATGATACTCTTTCCATTAAAGAGTTTGATAAAGCTGAACCACAAAGAGAAGATGCCAAATCTGAGGACTCAAGTAAATCAATCATTTACAACAATGGCAATGACAAAGAGGGGTCTACTCATGAGGTCACATCAACTAGCACACTCGATTTTGTGGATGAGGAGCCAAGGCTTTCTGTTGAACATTTTCAGAAGCCAGATACAAATGCTATAAATCCAGTGACTTCCAAAGTTGATGATACTCTTTCCGGTAAAGAGTTTGATACAGCTCAAACACAAAGAGAAGATGCCAAACCTGAGGAGTCAAGTAAATCAACCACTTACAACAATGTCAATGACAAAGAGGGGTCTACTGATGACGTCACATCAACGAGCACCCTCGACTCTGTGCATGAAGAGCCACAGCTTTCTGTTGACAAATTTGAGAAGCCAGATACTAATGACATAAATGCAGTGACTGCTAAAGTTGATGGTACTTTTTCCAATGAAGGTTTTGATAAATTTGAAGAATGCAATGACAATGATAAAATCAGTTGTATCAATGAGAAGATGGCATCAACAAATGTGCATTCTGTCAGGGTTGAACAAGATCCTGATACTATAAGCTGCTTGAAGGAAAGCGAAAAATCACAATCATTCACAGAAGACTCACGCATGAACATCCTGAATTCTCAGAGCAATGGCACACTTTTAACCAAACATGAAGGCAGAGAAAACACACACATAATCAGTCATTCCACACATAAAGGCGATAAAAATGGCTCTGTGATTGATAAAATCCAAAATGAAATTTCCTTTAATGCAAACAATCCAGTAGTCGGTGATAAAACAAAGAGGGTGTTGAAAAATTCCGGCCAACAAAGAGCCGATGCTTTGGAATCTCTACTTGAGTTATGTGCTCATTTACTTAAGCAAGGAAAGCTCGAAGAGCTTGCTGCGGTGCTAAGACCATTTGGAGAAGACACAGTTTCATCCAGAGAAACAGCTATATGGCTGACAAAAAGCCTCATGTCATCGCAAAAATTTAATCCAGAAACCTAG 3651 0.3985 MEDYEISEKLGRGALGATFLVLHKTDRKRYVLKKIRLSKHSEKSKLTAYQEMDLIANLNYPYIVEYKDAWVEKEDYIYIISGFCEGGDMAENIKKSRGSFFPEEKVCKWMTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGDFGLAKLLDTDDLASSVVGTLNYMCPEIFADMPYGYKSDIWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSTISPLPIVYSSTLKQIIKSMLRKNPEHRPTAADLLRHPHLQPFVLRSRNTPSVFLPVHLISCNSPKKSYKSSGGKDNRDKDEGSANRLERVYPIEGDGDVQTRNRKLAVSSSTEDNLETKMVDPTSYTLEFSTSISGSKDESTTSESTVCSVCKEADFKSRAVRDMADTEVTSKSTLDSMHEKQVFATDQLSKSYAVTKKVEYSFSNKVSDKDEVHKESAKPGDSSKTIISCEDSNENDEDAVTSRCTPDKYKFSSKGFDEAEVQKEKAKPEDFIKSIMSSEYRTRNDIDGCIDEVTSESTLEFLLVEQFITEHFQNPDAFDINAVTTEVEGSFSEGYFDTLSDGGFNTFSEALTEDAKPEESSKSIIYSKDCNQNDKEQPIDDITSKNTLDSMNEEQEVVAENFPKSNTSVTTKTDGTLSSQCFDKGEAQREDALAEEDSRKSIICSKDSNGDDKERSTDDINLKRTLDSLHEQQELAAEHFQKLHIIDINPVISEVDDTLSNKESDIGEPPREDTKPEDSSKSITYNNDNEGSTDEVTSTSTLDSMHEERRLSVEHFQKPDANDINPVTSKADDTPSSEEFDKAEPRREDAKPADSSKSIICNKDNDKERSCDEVTSTSTLGSVHEERRLSVGHFQKPDTNDINPVTSNVDDTLSIKEFDKAEPQREDAKSEDSSKSIIYNNGNDKEGSTHEVTSTSTLDFVDEEPRLSVEHFQKPDTNAINPVTSKVDDTLSGKEFDTAQTQREDAKPEESSKSTTYNNVNDKEGSTDDVTSTSTLDSVHEEPQLSVDKFEKPDTNDINAVTAKVDGTFSNEGFDKFEECNDNDKISCINEKMASTNVHSVRVEQDPDTISCLKESEKSQSFTEDSRMNILNSQSNGTLLTKHEGRENTHIISHSTHKGDKNGSVIDKIQNEISFNANNPVVGDKTKRVLKNSGQQRADALESLLELCAHLLKQGKLEELAAVLRPFGEDTVSSRETAIWLTKSLMSSQKFNPET 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 645 679 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 283 337 - -
Vifa3g00549 1216 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vifa3g00549 1216 SUPERFAMILY Protein kinase-like (PK-like) 1 283 IPR011009 -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 857 873 - -
Vifa3g00549 1216 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 721 740 - -
Vifa3g00549 1216 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 620 644 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 795 834 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 620 679 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 874 894 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 429 462 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 573 607 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 721 1013 - -
Vifa3g00549 1216 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 942 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 322 337 - -
Vifa3g00549 1216 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 935 949 - -
Vifa3g00549 1216 Gene3D Transferase(Phosphotransferase) domain 1 84 268 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 895 922 - -
Vifa3g00549 1216 FunFam serine/threonine-protein kinase Nek6 isoform X2 84 272 - -
Vifa3g00549 1216 CDD STKc_Nek 3 258 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 289 320 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 762 778 - -
Vifa3g00549 1216 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 741 761 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 973 1002 - -
Vifa3g00549 1216 MobiDBLite consensus disorder prediction 951 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00549 Vifa-Chr3 97908707 97915537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00549 4 259 MAP Kinase Kinase Kinase AT3G13530 31.907 1.69e-34 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa3g00549 Pkinase 2.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00549 K08857 - gmx:100818558 940.258