Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00546 ATGGCAGACCCTTACTCCAATTTCTTCTCCTCAAATTTCTTTCAATTCAACCATTACTCTTCTTCAAACCCTTCACCCCACCACCACCACCATCATAACCATCATCCTAATTATCTTCACAATTTCATCAACCATACATCTTTCAACAACACTCACAACAACAACAACAACAACAACACTTTTTTCCACTACCATCACCATCATCATCTTCACTCTACTACATCTTCACCTTCTTCTCCTCCTTTAAAAGAAGCACTTCCACTTTTGAGCCTAATCCCTACAAAACAACAAGAACATGAAAATCACCATCACCAACATCAACATCATGAACAATCCCTCACTTTGATGGATGTGGAAGATAAAAATCACAAAGTAGAGGAAACCGATCATCAAGGTGTGATTGTTGCACTACATATAGGGTTACCAAACCCTAGTGCTGCTGAGATTGCTAATATGATGATATCTTCATCTTCTTCTGAGACTATGATCAATGAAAGAGATCAACAACAACAACATCAACAAGAACAAGGAGATGTTATAAGTGAGGATTCATCTTATGATTTGTTGAGTAGTAATACATCATTGAACAAGGGTCAATATTGGATCCCTACACCTTCTCAGATTCTAATTGGTCCTACACAGTTTTCTTGTCCAGTTTGCTGCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTTAGAGGTACACAACCAACAGGAATGCTGAGGCTTCCTTGCTACTGTTGTTCTCCAGGTTGCAGGAACAACATTGATCATCCAAGAGCGAAACCGTTGAAAGATTTCAGAACACTTCAAACACATTACAAGAGGAAACATGGAATTAAGCCTTTTATGTGTAGAAAATGTAGTAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGTCTTTGTGGTTCTGATTTTAAGCATAAGAGATCACTTAAAGATCATATAAGAGCTTTTGGAAGTGGTCATGCTGCTTATGGTATTGATCGTTTTGAAGAAGAAGATGAACCTGCTTCTGAAGTAGAACAAGATAATGATTCCACTCAGACTCAGTAG 1137 0.3826 MADPYSNFFSSNFFQFNHYSSSNPSPHHHHHHNHHPNYLHNFINHTSFNNTHNNNNNNNTFFHYHHHHHLHSTTSSPSSPPLKEALPLLSLIPTKQQEHENHHHQHQHHEQSLTLMDVEDKNHKVEETDHQGVIVALHIGLPNPSAAEIANMMISSSSSETMINERDQQQQHQQEQGDVISEDSSYDLLSSNTSLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGIDRFEEEDEPASEVEQDNDSTQTQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00546 378 PANTHER ZINC FINGER PROTEIN WIP2 45 373 IPR043584 GO:0003700|GO:0010468
Vifa3g00546 378 Gene3D Classic Zinc Finger 214 237 - -
Vifa3g00546 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 242 IPR013087 -
Vifa3g00546 378 FunFam Zinc finger protein WIP2 268 350 - -
Vifa3g00546 378 SUPERFAMILY beta-beta-alpha zinc fingers 281 319 IPR036236 -
Vifa3g00546 378 Gene3D Classic Zinc Finger 297 373 - -
Vifa3g00546 378 MobiDBLite consensus disorder prediction 158 181 - -
Vifa3g00546 378 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00546 Vifa-Chr3 95301682 95303894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00546 1 378 C2H2 Transcription Factor Family AT3G57670 59.606 3.06e-142 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00546 - - tpra:123897861 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00546 3 95301682 95303894 Vifa3g00546 3 95301682 95303894 ECH
Vifa3g00546 3 95301682 95303894 Vifa1g00992 1 165324882 165327128 ECH
Vifa5g02401 5 787175973 787177725 Vifa3g00546 3 95301682 95303894 PCT