Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00524 ATGGATGATAAACTTGAACCATTTTCAGAACTTCCATGGCATTGGATAATTGAAACCCTAGCAGGTTTCAAAGAAATCCCCTTATCCATTTTACAAGGTTTGATTGATGCAGCACCTGTAAGGCGTGATGGTTTTTGTGAAAATACAAAGGAATTGGTTGCTTCGAGGTGTTTGGAGGAACTTTATGCTTCGTTTTCTTCTTCAACGTTGGATTCTAGAGTTGAATTTGATTCTTCGCGATCTTGTGAAGATGTTCTTCAAGAAATATTGCATGAGGTGCCTTTATCAAATCTGAGAATTGCTGGAGCAGGGCTATTGAAATGGGATGTTAACCCATTTATCGCACAAAAAAGAGCGGACAATGTGAAATGTCACTTAGAGAAGCTGAAAGAATCAATATTGGAAGGTACACTGCCACTTACTGATCATTTAAAAGAGAGGAGTGGATTATTCCCAACGAATCAGCCTCATACAATATGTGTGAATGATGGTAAATGCAGTGATCATTCAGTGAAGGATGATGGGAACTCTACTTATGCAGAAGACACGGGAGCAAAAGAAAACTCAGCTTGTATAAATGAACGTGATGAATTCTTAAGTACCAAAAGGACTAAACGTAGTGCATCGGCAAATTTTGATTCCAAGAAAGAAAAGCAAGTTTCTCAGTGTGAAAAGGAAGTGTCAGAAAACTCGACTGAAAAAGTTCTAATTTTTGAGGATGTAGGGCATCACACCGGAAAGAAAAACAGGGAAGCTCAGAGTGATGGATCCTTAGAGGCTAGTCATAATAGGTGTTCTGCTTCAAATTTATGTCAGTCAAGTGGTCAAAATGAAGCCTTTCATGCTGAATCAGATATTGCCTTTAAGGCAACTTTGACGCCTCAGCAGAAAACTTCTGGAGGTAAAACCCGGTCTGAACCTGAACCAGATTTGCAAATTAAAGATTTAAAATGTTCCCAGCAGACTGCTAGTAGTGTTAAAGCTCAAGATGATACTGGTCATGGTTGTGGGATAGAGATACCAGGTGATACAGTTGCGTACCAAGGTAAAAAGATTAATCTTGTAATGAAAAAGCACAAAAAGAGAAGTCTTGATACAAAGTGTAGCGAAGGTGGTCAATTACTGGTTTGTGAAGCGGTTACTGGCCCACTATTGGTTCCTGAAAGTTGTATTGGTATGACGACTAACATTTATCCTAAGCATACATCTGGAGTTGATCCTTGCCATAATAAATATATAGATGAAACTAACGATACTGTACATGTTGAGCCCATTCCAACATATGATGGTAATGCAAATAAAATTCAGCAGAAGGAGCCAAATGTTGCATCTATAAATGCCTCTTGGAAGCCAGTTGCTAGTGACAAAGCTGTAGTTGATACTGTCAATGATTGTGGAGCAGAGTTATCAAATGGTAGTGATGAGTATCACAACGAAAAGATTGATTTTGTAGCCAAAAAAGATGAATTCCTGAACTCCCAGCACACTTTTGGTCAAGATTTGCCAGCAATGACTGAATCAACCAGACAAAATCTTTGCATGAAGTGCAATGAAGCTGGGCAATTACTGGTTTGTAAAACTACCACTTGCTCAAGGATGGTGCATAAAAACTGCCTGGGTGCATCTGCTCAGTTGGATGCAAAGGGAAACTTTTTCTGCCCATTTTGTGCTTATTCTCACACTATTTCAGAATATCTTGAAGCCAAGAAAATAGCTTCATTGGCAAGGAAAGAATTAGCTATCTTCATTAGTAAGGGTATAAGAAAAGAAGCTGTAGAACATGTTCATGAATCAGGTAGACAAGAATGTACTTTTTCAAGAAAGAGTTATAAGTGCGAGCATACTCCGTTAACAGTGAATGAAGAAAATAAAGAAGATCGTGCTGGTGAGAATTCAAATAAAGTTGGTAATTTTCCTTTTGAAAGAAGTCAGAAACAAGTTCCTATTTCAGTGATTCACTCATCATCCTTCAGAGAAAAGGAAAATGTAAATAATGAGTTAGCAGGTGATGTAAGAGAAGAGGATGACTGTGAAATGCTGAATGCAAAGAGCTTAACTGGTGAAAGAGTTGAAGACAGAGAAATGGAAACTGATCATGCAGGTGGACATGGAAATGAAAAGTTTTCTTGTAAAAAGCTAAAGATTGTGTGTGCTAATGAAAGTAATGATGAAGAAGTTCTGCAGAATATGACAGAGCACAGTATGGATGGAACAGTAGAGCCAGTTTGGGCTCACAATACTGTAAAAGAAGAAATTTCTAAAGATGAATGCAAGAAGCGTATTATTTCTAGATACTCCATGAGATTTCGTATGCAGGAAGTTCAGAACAAAATCCAAGAAAGCTCTCAGATAAGACGGAAAAAAATCCCATGGACAGCTGAGGAGGAAGAGCTTATACAGGAGGGGGTCCAGAAGTTTGGTTTCAGCGACTCAAATCTGCCATGGAAGAAAATTTTGGCATTCGGTTCTCACTTGTTTGAGAAGAATGACAGGCTTCGAACTCCACAAGACTTAAAGGATAAATGGAAAAACATGTGCAAAGCAAACTCAAAATTGAAATAA 2562 0.3825 MDDKLEPFSELPWHWIIETLAGFKEIPLSILQGLIDAAPVRRDGFCENTKELVASRCLEELYASFSSSTLDSRVEFDSSRSCEDVLQEILHEVPLSNLRIAGAGLLKWDVNPFIAQKRADNVKCHLEKLKESILEGTLPLTDHLKERSGLFPTNQPHTICVNDGKCSDHSVKDDGNSTYAEDTGAKENSACINERDEFLSTKRTKRSASANFDSKKEKQVSQCEKEVSENSTEKVLIFEDVGHHTGKKNREAQSDGSLEASHNRCSASNLCQSSGQNEAFHAESDIAFKATLTPQQKTSGGKTRSEPEPDLQIKDLKCSQQTASSVKAQDDTGHGCGIEIPGDTVAYQGKKINLVMKKHKKRSLDTKCSEGGQLLVCEAVTGPLLVPESCIGMTTNIYPKHTSGVDPCHNKYIDETNDTVHVEPIPTYDGNANKIQQKEPNVASINASWKPVASDKAVVDTVNDCGAELSNGSDEYHNEKIDFVAKKDEFLNSQHTFGQDLPAMTESTRQNLCMKCNEAGQLLVCKTTTCSRMVHKNCLGASAQLDAKGNFFCPFCAYSHTISEYLEAKKIASLARKELAIFISKGIRKEAVEHVHESGRQECTFSRKSYKCEHTPLTVNEENKEDRAGENSNKVGNFPFERSQKQVPISVIHSSSFREKENVNNELAGDVREEDDCEMLNAKSLTGERVEDREMETDHAGGHGNEKFSCKKLKIVCANESNDEEVLQNMTEHSMDGTVEPVWAHNTVKEEISKDECKKRIISRYSMRFRMQEVQNKIQESSQIRRKKIPWTAEEEELIQEGVQKFGFSDSNLPWKKILAFGSHLFEKNDRLRTPQDLKDKWKNMCKANSKLK 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00524 853 ProSiteProfiles Myb-like domain profile. 783 846 IPR001005 -
Vifa3g00524 853 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 436 849 - -
Vifa3g00524 853 MobiDBLite consensus disorder prediction 238 257 - -
Vifa3g00524 853 MobiDBLite consensus disorder prediction 292 315 - -
Vifa3g00524 853 MobiDBLite consensus disorder prediction 202 226 - -
Vifa3g00524 853 MobiDBLite consensus disorder prediction 238 260 - -
Vifa3g00524 853 CDD SANT_TRF 789 847 - -
Vifa3g00524 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 565 IPR013083 -
Vifa3g00524 853 Pfam Myb-like DNA-binding domain 790 844 IPR001005 -
Vifa3g00524 853 Gene3D - 779 849 - -
Vifa3g00524 853 SMART sant 787 848 IPR001005 -
Vifa3g00524 853 SUPERFAMILY Homeodomain-like 785 847 IPR009057 -
Vifa3g00524 853 SUPERFAMILY FYVE/PHD zinc finger 508 560 IPR011011 -
Vifa3g00524 853 ProSiteProfiles Zinc finger PHD-type profile. 510 559 IPR019787 -
Vifa3g00524 853 SMART PHD_3 512 557 IPR001965 -
Vifa3g00524 853 ProSitePatterns Zinc finger PHD-type signature. 513 556 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00524 Vifa-Chr3 90166957 90171159 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa3g00524 Myb_DNA-binding 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00524 - - cam:101508857 1211.44